Evidence map›Paper›PMID 29743008›Full record

ArticleBMC biochemistry2018

Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic Corynebacterium urealyticum DSM 7109.

Narges Abdali, Farhan Younas, Samaneh Mafakheri, Karunakar R Pothula, Ulrich Kleinekathöfer, Andreas Tauch, Roland Benz

Open access · bronzeAbstract read
In one paragraph

Article in BMC biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Narges AbdaliDepartment of Life Sciences and Chemistry, Jacobs-University Bremen, Campusring 1, D-28759, Bremen, Germany.
Farhan YounasDepartment of Life Sciences and Chemistry, Jacobs-University Bremen, Campusring 1, D-28759, Bremen, Germany.
Samaneh MafakheriDepartment of Life Sciences and Chemistry, Jacobs-University Bremen, Campusring 1, D-28759, Bremen, Germany.
Karunakar R PothulaDepartment of Physics and Earth Sciences, Jacobs University Bremen, Bremen, Germany.
Ulrich KleinekathöferDepartment of Physics and Earth Sciences, Jacobs University Bremen, Bremen, Germany.
Andreas TauchInstitute for Genome Research and Systems Biology, Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany.
Roland BenzDepartment of Life Sciences and Chemistry, Jacobs-University Bremen, Campusring 1, D-28759, Bremen, Germany. r.benz@jacobs-university.de.ORCID 0000-0002-9510-9265
Constructor University · DEBielefeld University · DE

Funding

Deutsche Forschungsgemeinschaft BE 865/16FP7 Ideas: European Research Council 115525
6 · The paper itself

Abstract

backgroundCorynebacterium urealyticum, a pathogenic, multidrug resistant member of the mycolata, is known as causative agent of urinary tract infections although it is a bacterium of the skin flora. This pathogenic bacterium shares with the mycolata the property of having an unusual cell envelope composition and architecture, typical for the genus Corynebacterium. The cell wall of members of the mycolata contains channel-forming proteins for the uptake of solutes.

resultsIn this study, we provide novel information on the identification and characterization of a pore-forming protein in the cell wall of C. urealyticum DSM 7109. Detergent extracts of whole C. urealyticum cultures formed in lipid bilayer membranes slightly cation-selective pores with a single-channel conductance of 1.75 nS in 1 M KCl. Experiments with different salts and non-electrolytes suggested that the cell wall pore of C. urealyticum is wide and water-filled and has a diameter of about 1.8 nm. Molecular modelling and dynamics has been performed to obtain a model of the pore. For the search of the gene coding for the cell wall pore of C. urealyticum we looked in the known genome of C. urealyticum for a similar chromosomal localization of the porin gene to known porH and porA genes of other Corynebacterium strains. Three genes are located between the genes coding for GroEL2 and polyphosphate kinase (PKK2). Two of the genes (cur_1714 and cur_1715) were expressed in different constructs in C. glutamicum ΔporAΔporH and in porin-deficient BL21 DE3 Omp8 E. coli strains. The results suggested that the gene cur_1714 codes alone for the cell wall channel. The cell wall porin of C. urealyticum termed PorACur was purified to homogeneity using different biochemical methods and had an apparent molecular mass of about 4 kDa on tricine-containing sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE).

conclusionsBiophysical characterization of the purified protein (PorACur) suggested indeed that cur_1714 is the gene coding for the pore-forming protein in C. urealyticum because the protein formed in lipid bilayer experiments the same pores as the detergent extract of whole cells. The study is the first report of a cell wall channel in the pathogenic C. urealyticum.

Indexed as

Amino Acid SequenceAnti-Bacterial AgentsBacterial ProteinsCell WallCorynebacteriumElectrophoresis, Polyacrylamide GelHumansHydrophobic and Hydrophilic InteractionsLipid BilayersMolecular Dynamics SimulationPorinsProtein Structure, SecondarySequence Homology, Amino AcidUrinary Tract InfectionsAnti-Bacterial AgentsBacterial ProteinsLipid BilayersPorinsCell wall channelCorynebacterium urealyticumLipid bilayer membraneMycolic acidPorin

Identifiers

PMID29743008
PMCPMC5944148
OpenAlexW2807016569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.