Evidence map›Paper›PMID 29742151›Full record

ArticlePloS one2018

Genetic diversity and virulence profiles of Listeria monocytogenes recovered from bulk tank milk, milk filters, and milking equipment from dairies in the United States (2002 to 2014).

Seon Woo Kim, Julie Haendiges, Eric N Keller, Robert Myers, Alexander Kim, Jason E Lombard, Jeffrey S Karns, Jo Ann S Van Kessel, Bradd J Haley

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

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  13. Genetic Diversity and Potential Virulence ofFoods (Basel, Switzerland) · 2022
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  20. Phylogenetic and Evolutionary Genomic Analysis ofFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Seon Woo KimEnvironmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America.
Julie HaendigesMaryland Department of Health and Mental Hygiene, Baltimore, MD, United States of America.
Eric N KellerMaryland Department of Health and Mental Hygiene, Baltimore, MD, United States of America.
Robert MyersMaryland Department of Health and Mental Hygiene, Baltimore, MD, United States of America.
Alexander KimMaryland Department of Health and Mental Hygiene, Baltimore, MD, United States of America.
Jason E LombardCenter for Epidemiology and Animal Health, USDA-Animal and Plant Health Inspection Service, Veterinary Services, Fort Collins, CO, United States of America.
Jeffrey S KarnsEnvironmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America.
Jo Ann S Van KesselEnvironmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America.
Bradd J HaleyEnvironmental Microbial and Food Safety Laboratory, Beltsville Agricultural Research Center, Agricultural Research Services, United States Department of Agriculture, Beltsville, MD, United States of America.ORCID 0000-0001-7996-1143

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unpasteurized dairy products are known to occasionally harbor Listeria monocytogenes and have been implicated in recent listeriosis outbreaks and numerous sporadic cases of listeriosis. However, the diversity and virulence profiles of L. monocytogenes isolates recovered from these products have not been fully described. Here we report a genomic analysis of 121 L. monocytogenes isolates recovered from milk, milk filters, and milking equipment collected from bovine dairy farms in 19 states over a 12-year period. In a multi-virulence-locus sequence typing (MVLST) analysis, 59 Virulence Types (VT) were identified, of which 25% were Epidemic Clones I, II, V, VI, VII, VIII, IX, or X, and 31 were novel VT. In a multi-locus sequence typing (MLST) analysis, 60 Sequence Types (ST) of 56 Clonal Complexes (CC) were identified. Within lineage I, CC5 and CC1 were among the most abundant, and within lineage II, CC7 and CC37 were the most abundant. Multiple CCs previously associated with central nervous system and maternal-neonatal infections were identified. A genomic analysis identified variable distribution of virulence markers, Listeria pathogenicity islands (LIPI) -1, -3, and -4, and stress survival island-1 (SSI-1). Of these, 14 virulence markers, including LIPI-3 and -4 were more frequently detected in one lineage (I or II) than the other. LIPI-3 and LIPI-4 were identified in 68% and 28% of lineage I CCs, respectively. Results of this analysis indicate that there is a high level of genetic diversity among the L. monocytogenes present in bulk tank milk in the United States with some strains being more frequently detected than others, and some being similar to those that have been isolated from previous non-dairy related outbreaks. Results of this study also demonstrate significant number of strains isolated from dairy farms encode virulence markers associated with severe human disease.

Indexed as

Genetic VariationAnimalsCattleDairy ProductsDisease OutbreaksFood ContaminationHumansListeria monocytogenesListeriosisMilkUnited StatesVirulence FactorsVirulence Factors

Identifiers

PMID29742151
PMCPMC5942804

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.