Evidence map›Paper›PMID 29740455›Full record

ArticleFrontiers in immunology2018

Sequence-Based Discovery Demonstrates That Fixed Light Chain Human Transgenic Rats Produce a Diverse Repertoire of Antigen-Specific Antibodies.

Katherine E Harris, Shelley Force Aldred, Laura M Davison, Heather Anne N Ogana, Andrew Boudreau, Marianne Brüggemann, Michael Osborn, Biao Ma, Benjamin Buelow, Starlynn C Clarke and 12 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Katherine E HarrisTeneobio, Inc., Menlo Park, CA, United States.
Shelley Force AldredTeneobio, Inc., Menlo Park, CA, United States.
Laura M DavisonTeneobio, Inc., Menlo Park, CA, United States.
Heather Anne N OganaTeneobio, Inc., Menlo Park, CA, United States.
Andrew BoudreauTeneobio, Inc., Menlo Park, CA, United States.
Marianne BrüggemannTeneobio, Inc., Menlo Park, CA, United States.
Michael OsbornTeneobio, Inc., Menlo Park, CA, United States.
Biao MaTeneobio, Inc., Menlo Park, CA, United States.
Benjamin BuelowTeneobio, Inc., Menlo Park, CA, United States.
Starlynn C ClarkeTeneobio, Inc., Menlo Park, CA, United States.
Kevin H DangTeneobio, Inc., Menlo Park, CA, United States.
Suhasini IyerTeneobio, Inc., Menlo Park, CA, United States.
Brett JorgensenTeneobio, Inc., Menlo Park, CA, United States.
Duy T PhamTeneobio, Inc., Menlo Park, CA, United States.
Payal P PratapTeneobio, Inc., Menlo Park, CA, United States.
Udaya S RangaswamyTeneobio, Inc., Menlo Park, CA, United States.
Ute SchellenbergerTeneobio, Inc., Menlo Park, CA, United States.
Wim C van SchootenTeneobio, Inc., Menlo Park, CA, United States.
Harshad S UgamrajTeneobio, Inc., Menlo Park, CA, United States.
Omid VafaTeneobio, Inc., Menlo Park, CA, United States.
Roland BuelowTeneobio, Inc., Menlo Park, CA, United States.
Nathan D TrinkleinTeneobio, Inc., Menlo Park, CA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We created a novel transgenic rat that expresses human antibodies comprising a diverse repertoire of heavy chains with a single common rearranged kappa light chain (IgKV3-15-JK1). This fixed light chain animal, called OmniFlic, presents a unique system for human therapeutic antibody discovery and a model to study heavy chain repertoire diversity in the context of a constant light chain. The purpose of this study was to analyze heavy chain variable gene usage, clonotype diversity, and to describe the sequence characteristics of antigen-specific monoclonal antibodies (mAbs) isolated from immunized OmniFlic animals. Using next-generation sequencing antibody repertoire analysis, we measured heavy chain variable gene usage and the diversity of clonotypes present in the lymph node germinal centers of 75 OmniFlic rats immunized with 9 different protein antigens. Furthermore, we expressed 2,560 unique heavy chain sequences sampled from a diverse set of clonotypes as fixed light chain antibody proteins and measured their binding to antigen by ELISA. Finally, we measured patterns and overall levels of somatic hypermutation in the full B-cell repertoire and in the 2,560 mAbs tested for binding. The results demonstrate that OmniFlic animals produce an abundance of antigen-specific antibodies with heavy chain clonotype diversity that is similar to what has been described with unrestricted light chain use in mammals. In addition, we show that sequence-based discovery is a highly effective and efficient way to identify a large number of diverse monoclonal antibodies to a protein target of interest.

Indexed as

AnimalsAntibodies, MonoclonalAntigensB-LymphocytesDrug DiscoveryGenes, Immunoglobulin Heavy ChainGenes, Immunoglobulin Light ChainGerminal CenterHigh-Throughput Nucleotide SequencingImmunoglobulin Heavy ChainsImmunoglobulin kappa-ChainsModels, AnimalRatsRats, Sprague-DawleyRats, TransgenicAntibodies, MonoclonalAntigensImmunoglobulin Heavy ChainsImmunoglobulin kappa-Chainsantibody repertoiredeep sequencinghumanized rodentmonoclonal human antibodiesrearranged light chainsomatic hypermutationtransgenic rodent

Identifiers

PMID29740455
PMCPMC5928204
OpenAlexW2803043888

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.