Evidence map›Paper›PMID 29740124›Full record

ArticleScientific reports2018

A targeted boost-and-sort immunization strategy using Escherichia coli BamA identifies rare growth inhibitory antibodies.

Rajesh Vij, Zhonghua Lin, Nancy Chiang, Jean-Michel Vernes, Kelly M Storek, Summer Park, Joyce Chan, Y Gloria Meng, Laetitia Comps-Agrar, Peng Luan and 15 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 37 citations in OpenAlex.

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  19. Therapeutic Antibodies Targeting Potassium Ion Channels.Handbook of experimental pharmacology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 1 institution in 1 country.

Rajesh VijDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Zhonghua LinDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Nancy ChiangDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Jean-Michel VernesDepartment of Biochemical and Cellular Pharmacology, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Kelly M StorekDepartment of Infectious Diseases, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Summer ParkDepartment of Translational Immunology, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Joyce ChanDepartment of Biochemical and Cellular Pharmacology, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Y Gloria MengDepartment of Biochemical and Cellular Pharmacology, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Laetitia Comps-AgrarDepartment of Biochemical and Cellular Pharmacology, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Peng LuanDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Sophia LeeDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Kellen SchneiderDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Jack BeversDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Inna ZilberleybDepartment of BioMolecular Resources, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Christine TamDepartment of BioMolecular Resources, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Christopher M KothDepartment of Structural Biology, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Min XuDepartment of Translational Immunology, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Avinash GillDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Marcy R AuerbachDepartment of Infectious Diseases, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Peter A SmithDepartment of Infectious Diseases, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Steven T RutherfordDepartment of Infectious Diseases, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Gerald NakamuraDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Dhaya SeshasayeeDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA.
Jian PayandehDepartment of Structural Biology, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA. payandeh.jian@gene.com.
James T KoerberDepartment of Antibody Engineering, Genentech, 1 DNA Way, South San Francisco, California, 94080, USA. koerber.james@gene.com.
ATUM (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Outer membrane proteins (OMPs) in Gram-negative bacteria are essential for a number of cellular functions including nutrient transport and drug efflux. Escherichia coli BamA is an essential component of the OMP β-barrel assembly machinery and a potential novel antibacterial target that has been proposed to undergo large (~15 Å) conformational changes. Here, we explored methods to isolate anti-BamA monoclonal antibodies (mAbs) that might alter the function of this OMP and ultimately lead to bacterial growth inhibition. We first optimized traditional immunization approaches but failed to identify mAbs that altered cell growth after screening >3000 hybridomas. We then developed a "targeted boost-and-sort" strategy that combines bacterial cell immunizations, purified BamA protein boosts, and single hybridoma cell sorting using amphipol-reconstituted BamA antigen. This unique workflow improves the discovery efficiency of FACS + mAbs by >600-fold and enabled the identification of rare anti-BamA mAbs with bacterial growth inhibitory activity in the presence of a truncated lipopolysaccharide layer. These mAbs represent novel tools for dissecting the BamA-mediated mechanism of β-barrel folding and our workflow establishes a new template for the efficient discovery of novel mAbs against other highly dynamic membrane proteins.

Indexed as

Antibodies, MonoclonalBacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsImmunizationProtein ConformationProtein FoldingProtein TransportVaccinationAntibodies, MonoclonalBacterial Outer Membrane ProteinsBamA protein, E coliEscherichia coli Proteins

Identifiers

PMID29740124
PMCPMC5940829
OpenAlexW2806396616

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.