ArticlemBio2018
Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen
Open access · goldAbstract readComparative Study
In one paragraph
Article in mBio, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
20 citing papers in PubMed, 33 citations in OpenAlex.
- Predicting antifolate resistance in the unculturable fungal pathogen Pneumocystis jirovecii.PLoS genetics · 2026Article
- Three distinct forms of Pneumocystis coexist in individuals of two species of deer mice (genus Peromyscus).Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2025Article
- Evolving spectrum of Pneumocystis host specificity, genetic diversity, and evolution.FEMS microbiology reviews · 2025Review
- Retracing the evolution ofMicrobiology and molecular biology reviews : MMBR · 2024Review
- Axenic Long-Term Cultivation ofJournal of fungi (Basel, Switzerland) · 2023Article
- Pathologic characteristics of infectious diseases in macaque monkeys used in biomedical and toxicologic studies.Journal of toxicologic pathology · 2023Review
- Article
- Review
- Article
- Fungal biodiversity and conservation mycology in light of new technology, big data, and changing attitudes.Current biology : CB · 2021Review
- Fungal Genomics in Respiratory Medicine: What, How and When?Mycopathologia · 2021Review
- Genomic insights into the host specific adaptation of the Pneumocystis genus.Communications biology · 2021Article
- Rethinking host range in Pneumocystis.PLoS pathogens · 2020Review
- Article
- Metagenomic Next-Generation Sequencing in Diagnosis of a Case ofInfection and drug resistance · 2020Article
- Fifty Aureobasidium pullulans genomes reveal a recombining polyextremotolerant generalist.Environmental microbiology · 2019Article
- Correlating Genotype and Phenotype in the Asexual YeastG3 (Bethesda, Md.) · 2019Article
- Article
- Article
- Genotyping of Pneumocystis jirovecii by Use of a New Simplified Nomenclature System Based on the Internal Transcribed Spacer Regions and 5.8S rRNA Gene of the rRNA Operon.Journal of clinical microbiology · 2019Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
16 authors at 7 institutions in 2 countries.
Ousmane H CisséCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA ousmane.cisse@nih.gov jkovacs@mail.nih.gov.ORCID 0000-0002-2990-2185
Liang MaCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Da Wei HuangLymphoid Malignancies Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.
Pavel P KhilDepartment of Laboratory Medicine, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
John P DekkerDepartment of Laboratory Medicine, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Geetha KuttyCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Lisa BishopCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Yueqin LiuCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Xilong DengCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.
Philippe M HauserInstitute of Microbiology, Lausanne University Hospital, Lausanne, Switzerland.ORCID 0000-0003-2834-7922
Marco PagniVital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Vanessa HirschLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Disease, National Institutes of Health, Bethesda, Maryland, USA.
Richard A LempickiLeidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Jason E StajichDepartment of Plant Pathology and Microbiology and Institute for Integrative Genome Biology, University of California, Riverside, Riverside, California, USA.ORCID 0000-0002-7591-0020
Christina A CuomoInfectious Disease and Microbiome Program, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.ORCID 0000-0002-5778-960X
Joseph A KovacsCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA ousmane.cisse@nih.gov jkovacs@mail.nih.gov.ORCID 0000-0002-5191-9880
National Institutes of Health Clinical Center · USNational Institutes of Health · USBroad Institute · USLeidos (United States) · USSIB Swiss Institute of Bioinformatics · CHUniversity of California, Riverside · USUniversity of Lausanne · CH
Funding
Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6MPathogenesis Studies Of Simian Immunodeficiency Virus Infection Of MonkeysZIAAI000370 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HIRSCH, VANESSA M. · 2009 to 2022
$16.2MApplication of Genomic Approaches to Bacterial Pathogenesis and Mechanisms of Antimicrobial ResistanceZIAAI001249 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI DEKKER, JOHN · 2019 to 2025
$13.7MMolecular Studies Of Human Pneumocystis CariniiZIACL000192 · CLC · CLINICAL CENTER · PI KOVACS, JOSEPH A · 2009 to 2025
$0kNext Generation Sequencing Methods in Molecular MicrobiologyZIACL080020 · CLC · CLINICAL CENTER · PI DEKKER, JOHN · 2015 to 2018
$0kCCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENHGRI NIH HHS U54 HG003067
Abstract
PubMed holds no abstract for this paper.
Indexed as
AnimalsGenetic VariationGenomicsHumansMicePhylogenyPneumocystisPneumonia, PneumocystisRatsRats, Sprague-DawleyRecombination, GeneticRodent Diseasesevolutionary biologygenetic diversitygenetic recombinationpneumoniapopulation structure
Identifiers
What OpenQuestion holds
Textmetadata
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.