Evidence map›Paper›PMID 29739334›Full record

ArticleBMC genomics2018

Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation.

Hilary A Uyhelji, Doris M Kupfer, Vicky L White, Melinda L Jackson, Hans P A Van Dongen, Dennis M Burian

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 37 citations in OpenAlex.

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  7. Human serum proteomics reveals a molecular signature after one night of sleep deprivation.Sleep advances : a journal of the Sleep Research Society · 2024
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  13. Unique transcriptional signatures of sleep loss across independently evolved cavefish populations.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2020
    Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Hilary A UyheljiCivil Aerospace Medical Institute, Federal Aviation Administration, Oklahoma City, OK, 73169, USA. hilary.uyhelji@faa.gov.
Doris M KupferCivil Aerospace Medical Institute, Federal Aviation Administration, Oklahoma City, OK, 73169, USA. kupfer_doris@yahoo.com.
Vicky L WhiteCivil Aerospace Medical Institute, Federal Aviation Administration, Oklahoma City, OK, 73169, USA.
Melinda L JacksonSleep and Performance Research Center & Elson S. Floyd College of Medicine, Washington State University, Spokane, WA, 99210, USA.
Hans P A Van DongenSleep and Performance Research Center & Elson S. Floyd College of Medicine, Washington State University, Spokane, WA, 99210, USA.
Dennis M BurianCivil Aerospace Medical Institute, Federal Aviation Administration, Oklahoma City, OK, 73169, USA.
Civil Aerospace Medical Institute · USWashington State University Spokane · US

Funding

Mechanisms of Sleep Loss Effects on Cognitive Components of Decision MakingR01HL105768 · NHLBI · WASHINGTON STATE UNIVERSITY · PI JACKSON, MELINDA L. · 2011 to 2011
$380k
Federal Aviation Administration DTFAAC-11-A-00003National Heart, Lung, and Blood Institute R01HL105768NHLBI NIH HHS R01 HL105768
6 · The paper itself

Abstract

backgroundAlthough sleep deprivation is associated with neurobehavioral impairment that may underlie significant risks to performance and safety, there is no reliable biomarker test to detect dangerous levels of impairment from sleep loss in humans. This study employs microarrays and bioinformatics analyses to explore candidate gene expression biomarkers associated with total sleep deprivation (TSD), and more specifically, the phenotype of neurobehavioral impairment from TSD. Healthy adult volunteers were recruited to a sleep laboratory for seven consecutive days (six nights). After two Baseline nights of 10 h time in bed, 11 subjects underwent an Experimental phase of 62 h of continuous wakefulness, followed by two Recovery nights of 10 h time in bed. Another six subjects underwent a well-rested Control condition of 10 h time in bed for all six nights. Blood was drawn for measuring gene expression on days two, four, and six at 4 h intervals from 08:00 to 20:00 h, corresponding to 12 timepoints across one Baseline, one Experimental, and one Recovery day.

resultsAltogether 212 genes changed expression in response to the TSD Treatment, with most genes exhibiting down-regulation during TSD. Also, 28 genes were associated with neurobehavioral impairment as measured by the Psychomotor Vigilance Test. The results support previous findings associating TSD with the immune response and ion signaling, and reveal novel candidate biomarkers such as the Speedy/RINGO family of cell cycle regulators.

conclusionsThis study serves as an important step toward understanding gene expression changes during sleep deprivation. In addition to exploring potential biomarkers for TSD, this report presents novel candidate biomarkers associated with lapses of attention during TSD. Although further work is required for biomarker validation, analysis of these genes may aid fundamental understanding of the impact of TSD on neurobehavioral performance.

Indexed as

Gene Regulatory NetworksAdultBiomarkersFemaleHealthy VolunteersHigh-Throughput Nucleotide SequencingHumansMaleMicroRNAsNeuropsychological TestsPsychomotor PerformanceRNA, MessengerSleepSleep DeprivationSleep Initiation and Maintenance DisordersTime FactorsBiomarkersMicroRNAsRNA, MessengerBiomarkerNeurobehavioral impairmentPVT lapsesSleep deprivationSpeedy/RINGO

Identifiers

PMID29739334
PMCPMC5941663
OpenAlexW2800995660

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.