Evidence map›Paper›PMID 29739331›Full record

ArticleBMC plant biology2018

Purple Brassica oleracea var. capitata F. rubra is due to the loss of BoMYBL2-1 expression.

Hayoung Song, Hankuil Yi, Myungjin Lee, Ching-Tack Han, Jeongyeo Lee, HyeRan Kim, Jong-In Park, Ill-Sup Nou, Sun-Ju Kim, Yoonkang Hur

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. The R2R3-MYB Transcriptional RepressorInternational journal of molecular sciences · 2024
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  12. Fine mapping of genes controlling pigment accumulation in oilseed rape (Molecular breeding : new strategies in plant improvement · 2023
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  14. Flavonoids - flowers, fruit, forage and the future.Journal of the Royal Society of New Zealand · 2023
    Review
  15. A Mutation in theInternational journal of molecular sciences · 2022
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Hayoung SongDepartment of Biological Sciences, College of Biological Science and Biotechnology, Chungnam National University, Daejeon, 34134, Republic of Korea.
Hankuil YiDepartment of Biological Sciences, College of Biological Science and Biotechnology, Chungnam National University, Daejeon, 34134, Republic of Korea.
Myungjin LeeDepartment of Biological Sciences, College of Biological Science and Biotechnology, Chungnam National University, Daejeon, 34134, Republic of Korea.
Ching-Tack HanDepartment of Life Science, Sogang University, Seoul, 04107, Republic of Korea.
Jeongyeo LeeKorea Research Institute of Bioscience and Biotechnology, 125 Gwahangno, Yuseong-gu, Daejoen, 34141, Republic of Korea.
HyeRan KimKorea Research Institute of Bioscience and Biotechnology, 125 Gwahangno, Yuseong-gu, Daejoen, 34141, Republic of Korea.
Jong-In ParkDepartment of Horticulture, Sunchon National University, Suncheon, Jeonnam, 57922, Republic of Korea.
Ill-Sup NouDepartment of Horticulture, Sunchon National University, Suncheon, Jeonnam, 57922, Republic of Korea.
Sun-Ju KimDepartment of BioEnvironmental Chemistry, College of Agriculture & Life Sciences, Chungnam National University, Daejeon, 34134, Republic of Korea.
Yoonkang HurDepartment of Biological Sciences, College of Biological Science and Biotechnology, Chungnam National University, Daejeon, 34134, Republic of Korea. ykhur@cnu.ac.kr.ORCID http://orcid.org/0000-0002-2325-2249
Chungnam National University · KRKorea Research Institute of Bioscience and Biotechnology · KRSunchon National University · KRSogang University · KR

Funding

Golden Seed Project 213007-05-1-SB620
6 · The paper itself

Abstract

backgroundWater-soluble anthocyanin pigments are important ingredients in health-improving supplements and valuable for the food industry. Although great attention has been paid to the breeding and production of crops containing high levels of anthocyanin, genetic variation in red or purple cabbages (Brassica oleracea var. capitata F. rubra) has not yet been characterized at the molecular level. In this study, we identified the mechanism responsible for the establishment of purple color in cabbages.

resultsBoMYBL2-1 is one of the regulatory genes in the anthocyanin biosynthesis pathway in cabbages. It is a repressor whose expression is inversely correlated to anthocyanin synthesis and is not detectable in purple cabbages. Sequence analysis of purple cabbages revealed that most lacked BoMYBL2-1 coding sequences, although a few had a substitution in the region of the promoter 347 bp upstream of the gene that was associated with an absence of BoMYBL2-1 expression. Lack of transcriptional activity of the substitution-containing promoter was confirmed using transgenic Arabidopsis plants transformed with promoter::GUS fusion constructs. The finding that the defect in BoMYBL2-1 expression was solely responsible for purple coloration in cabbages was further demonstrated using genomic PCR and RT-PCR analyses of many other structural and regulatory genes in anthocyanin biosynthesis. Molecular markers for purple cabbages were developed and validated using 69 cabbage lines.

conclusionExpression of BoMYBL2-1 was inversely correlated to anthocyanin content, and purple color in cabbages resulted from a loss of BoMYBL2-1 expression, caused by either the promoter substitution or deletion of the gene. This is the first report of molecular markers that distinguish purple cabbages. Such markers will be useful for the production of intraspecific and interspecific hybrids for functional foods, and for industrial purposes requiring high anthocyanin content.

Indexed as

AnthocyaninsBrassicaColorGenes, PlantGenetic MarkersPlant ProteinsPolymerase Chain ReactionPromoter Regions, GeneticRepressor ProteinsReverse Transcriptase Polymerase Chain ReactionSequence Analysis, DNAAnthocyaninsGenetic MarkersPlant ProteinsRepressor ProteinsAnthocyaninBoMYBL2–1Molecular markerPromoter substitutionPurple cabbage

Identifiers

PMID29739331
PMCPMC5941660
OpenAlexW2803997618

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.