Evidence map›Paper›PMID 29738522›Full record

ArticlePLoS genetics2018

De novo and inherited private variants in MAP1B in periventricular nodular heterotopia.

Erin L Heinzen, Adam C O'Neill, Xiaolin Zhu, Andrew S Allen, Melanie Bahlo, Jamel Chelly, Ming Hui Chen, William B Dobyns, Saskia Freytag, Renzo Guerrini and 7 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
15.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 73 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Review
  5. Article
  6. Novel MAP1B loss-of-function variant associated with periventricular nodular heterotopia 9 and literature review on genotype-phenotype associations of MAP1B.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Frontiers in neurology · 2024
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Distinctive Brain Malformations in Zhu-Tokita-Takenouchi-Kim Syndrome.AJNR. American journal of neuroradiology · 2022
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 5 countries.

Erin L HeinzenInstitute for Genomic Medicine, Columbia University Medical Center, New York, New York, United States of America.ORCID 0000-0002-7268-8559
Adam C O'NeillDepartment of Women's and Children's Health, Dunedin School of Medicine, University of Otago, Dunedin, New Zealand.
Xiaolin ZhuInstitute for Genomic Medicine, Columbia University Medical Center, New York, New York, United States of America.ORCID 0000-0002-3221-595X
Andrew S AllenCenter for Statistical Genetics and Genomics, Duke University Medical Center, Durham, North Carolina, United States of America.
Melanie BahloPopulation Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Jamel ChellyPôle de Biologie, Hôpitaux Universitaires de Strasbourg, Strasbourg, France.
Ming Hui ChenDepartment of Cardiology and Division of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, United States of America.
William B DobynsDepartments of Pediatrics and Neurology, University of Washington, Seattle, Washington, United States of America.
Saskia FreytagDepartment of Medical Biology, University of Melbourne, Parkville, Victoria, Australia.
Renzo GuerriniNeuroscience Department, Children's Hospital Anna Meyer-University of Florence, Florence, Italy.
Richard J LeventerDepartment of Neurology Royal Children's Hospital, University of Melbourne, Parkville, Victoria, Australia.
Annapurna PoduriDepartment of Neurology, Division of Epilepsy and Clinical Neurophysiology, Boston Children's Hospital, Boston, Massachusetts, United States of America.ORCID 0000-0002-7350-5136
Stephen P RobertsonDepartment of Women's and Children's Health, Dunedin School of Medicine, University of Otago, Dunedin, New Zealand.ORCID 0000-0002-5181-7809
Christopher A WalshDivision of Genetics and Genomics, Manton Center for Orphan Disease Research and Howard Hughes Medical Institute, Boston Children's Hospital, Boston, Massachusetts, United States of America.
Mengqi ZhangDepartment of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina, United States of America.
Epi4K Consortium
Epilepsy Phenome/Genome Project
Boston Children's Hospital · USColumbia University Irving Medical Center · USDuke University · USThe University of Melbourne · AUUniversity of Otago · NZBroad Institute · USCentre National de la Recherche Scientifique · FRMeyer Children's Hospital · ITRoyal Children's Hospital · AUUniversity of Washington · US

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI BHARDWAJ, NINA · 2006 to 2011
$290.5M
Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI MCMICHAEL, ANDREW JAMES · 2012 to 2018
$204.7M
Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
The Epilepsy Phenome/ Genome Project (EPGP)U01NS053998 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LOWENSTEIN, DANIEL H · 2007 to 2013
$26.4M
Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
VASCULAR FACTORS AND MILD COGNITIVE IMPAIRMENT AND ALZHEIMER'S DISEASEP01AG007232 · NIA · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LUCHSINGER, JOSE ALEJANDRO · 1989 to 2008
$21.7M
The North American Mitochondrial Disease Consortium (NAMDC)U54NS078059 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HIRANO, MICHIO · 2011 to 2023
$17.5M
Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
An integrated and diverse genomic medicine program for undiagnosed diseasesU01HG007672 · NHGRI · DUKE UNIVERSITY · PI SHASHI, VANDANA · 2014 to 2022
$13.4M
3 of 7 Epi4K: Sequencing, Biostatistics & Bioinformatics CoreU01NS077303 · NINDS · DUKE UNIVERSITY · PI EICHLER, EVAN, GOLDSTEIN, DAVID B. · 2011 to 2018
$13.3M
Epidemiology of Biomarkers of Risk and Progression in LOADR01AG037212 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MAYEUX, RICHARD P, SCHUPF, NICOLE · 2010 to 2015
$10.1M
NEUROPATHOLOGY COREP30AG028377 · NIA · DUKE UNIVERSITY · PI WELSH-BOHMER, KATHLEEN ANNE · 2006 to 2011
$9.6M
NCATS NIH HHS UL1 TR000040NCATS NIH HHS UL1 TR001873NHGRI NIH HHS U01 HG007672NHGRI NIH HHS UM1 HG006504NIAID NIH HHS R56 AI098588NIAID NIH HHS U19 AI067854NIAID NIH HHS UM1 AI100645NIA NIH HHS P01 AG007232NIA NIH HHS P30 AG028377NIA NIH HHS R01 AG037212NIA NIH HHS RF1 AG054023NICHD NIH HHS P01 HD080642NICHD NIH HHS R01 HD048805NIDDK NIH HHS R01 DK080099NIH HHS NS053998NIH HHS NS077274NIH HHS NS077276NIH HHS NS077303NIH HHS NS077364NIMH NIH HHS K01 MH098126NIMH NIH HHS R01 MH097971NIMH NIH HHS R01 MH099216NIMH NIH HHS RC2 MH089915NINDS NIH HHS K23 NS069784NINDS NIH HHS R01 NS035129NINDS NIH HHS R01 NS092772NINDS NIH HHS RC2 NS070344NINDS NIH HHS U01 NS053998NINDS NIH HHS U01 NS077274NINDS NIH HHS U01 NS077276NINDS NIH HHS U01 NS077303NINDS NIH HHS U01 NS077364NINDS NIH HHS U54 NS078059
6 · The paper itself

Abstract

Periventricular nodular heterotopia (PVNH) is a malformation of cortical development commonly associated with epilepsy. We exome sequenced 202 individuals with sporadic PVNH to identify novel genetic risk loci. We first performed a trio-based analysis and identified 219 de novo variants. Although no novel genes were implicated in this initial analysis, PVNH cases were found overall to have a significant excess of nonsynonymous de novo variants in intolerant genes (p = 3.27x10-7), suggesting a role for rare new alleles in genes yet to be associated with the condition. Using a gene-level collapsing analysis comparing cases and controls, we identified a genome-wide significant signal driven by four ultra-rare loss-of-function heterozygous variants in MAP1B, including one de novo variant. In at least one instance, the MAP1B variant was inherited from a parent with previously undiagnosed PVNH. The PVNH was frontally predominant and associated with perisylvian polymicrogyria. These results implicate MAP1B in PVNH. More broadly, our findings suggest that detrimental mutations likely arising in immediately preceding generations with incomplete penetrance may also be responsible for some apparently sporadic diseases.

Indexed as

Loss of Function MutationBrainExome SequencingFemaleGenetic Predisposition to DiseaseHeterozygoteHumansMagnetic Resonance ImagingMaleMicrotubule-Associated ProteinsPeriventricular Nodular Heterotopiamicrotubule-associated protein 1BMicrotubule-Associated Proteins

Identifiers

PMID29738522
PMCPMC5965900
OpenAlexW2799896146

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.