Evidence map›Paper›PMID 29736013›Full record

ArticleNature genetics2018

UTX-mediated enhancer and chromatin remodeling suppresses myeloid leukemogenesis through noncatalytic inverse regulation of ETS and GATA programs.

Malgorzata Gozdecka, Eshwar Meduri, Milena Mazan, Konstantinos Tzelepis, Monika Dudek, Andrew J Knights, Mercedes Pardo, Lu Yu, Jyoti S Choudhary, Emmanouil Metzakopian and 17 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 166 citations in OpenAlex.

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  16. Epigenetic regulation of cancer stemness.Signal transduction and targeted therapy · 2025
    Review
  17. Article
  18. Biomolecular condensates in immune cell fate.Nature reviews. Immunology · 2025
    Review
  19. Review
  20. Phase Separation in Chromatin Organization and Human Diseases.International journal of molecular sciences · 2025
    Review

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 4 countries.

Malgorzata GozdeckaHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
Eshwar MeduriWellcome Trust-MRC Stem Cell Institute, Cambridge Biomedical Campus, University of Cambridge, Cambridge, UK.
Milena MazanHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
Konstantinos TzelepisHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0002-4865-7648
Monika DudekHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
Andrew J KnightsGenomics of Gene Regulation, Wellcome Trust Sanger Institute, Hinxton, UK.
Mercedes PardoProteomic Mass Spectrometry, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0002-3477-9695
Lu YuProteomic Mass Spectrometry, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0001-8378-9112
Jyoti S ChoudharyProteomic Mass Spectrometry, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Emmanouil MetzakopianMouse Genomics, Wellcome Trust Sanger Institute, Hinxton, UK.
Vivek IyerExperimental Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
Haiyang YunWellcome Trust-MRC Stem Cell Institute, Cambridge Biomedical Campus, University of Cambridge, Cambridge, UK.
Naomi ParkSequencing Research Group, Wellcome Trust Sanger Institute, Cambridge, UK.
Ignacio VarelaInstituto de Biomedicina y Biotecnología de Cantabria (CSIC-UC-Sodercan), Departamento de Biología Molecular, Universidad de Cantabria, Santander, Spain.ORCID http://orcid.org/0000-0002-0969-506X
Ruben BautistaNew Pipeline Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK.
Grace CollordHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.ORCID http://orcid.org/0000-0003-1924-4411
Oliver DoveyHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
Dimitrios A GaryfallosHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
Etienne De BraekeleerHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
Saki KondoLaboratory of Molecular Genetics, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Jonathan CooperHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
Berthold GöttgensCambridge Institute for Medical Research and Wellcome Trust-Medical Research Council, Stem Cell Institute and Department of Haematology, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0001-6302-5705
Lars BullingerDepartment of Internal Medicine III, Ulm University Medical Centre, Ulm, Germany.
Paul A NorthcottDivision of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
David AdamsExperimental Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK.
George S VassiliouHaematological Cancer Genetics, Wellcome Trust Sanger Institute, Hinxton, UK. gsv20@sanger.ac.uk.ORCID http://orcid.org/0000-0003-4337-8022
Brian J P HuntlyWellcome Trust-MRC Stem Cell Institute, Cambridge Biomedical Campus, University of Cambridge, Cambridge, UK. bjph2@cam.ac.uk.ORCID http://orcid.org/0000-0003-0312-161X
Wellcome Sanger Institute · GBWellcome/MRC Cambridge Stem Cell Institute · GBSt. Jude Children's Research Hospital · USUniversidad de Cantabria · ESUniversität Ulm · DE

Funding

Cancer Research UK 21762Cancer Research UK 23015Cancer Research UK 25508Medical Research Council MC_PC_12009Medical Research Council MR/M010392/1Medical Research Council MR/R009708/1Wellcome Trust 206328/Z/17/Z
6 · The paper itself

Abstract

The histone H3 Lys27-specific demethylase UTX (or KDM6A) is targeted by loss-of-function mutations in multiple cancers. Here, we demonstrate that UTX suppresses myeloid leukemogenesis through noncatalytic functions, a property shared with its catalytically inactive Y-chromosome paralog, UTY (or KDM6C). In keeping with this, we demonstrate concomitant loss/mutation of KDM6A (UTX) and UTY in multiple human cancers. Mechanistically, global genomic profiling showed only minor changes in H3K27me3 but significant and bidirectional alterations in H3K27ac and chromatin accessibility; a predominant loss of H3K4me1 modifications; alterations in ETS and GATA-factor binding; and altered gene expression after Utx loss. By integrating proteomic and genomic analyses, we link these changes to UTX regulation of ATP-dependent chromatin remodeling, coordination of the COMPASS complex and enhanced pioneering activity of ETS factors during evolution to AML. Collectively, our findings identify a dual role for UTX in suppressing acute myeloid leukemia via repression of oncogenic ETS and upregulation of tumor-suppressive GATA programs.

Indexed as

Enhancer Elements, GeneticAnimalsCell LineChromatinChromatin Assembly and DisassemblyGATA Transcription FactorsGene Expression Regulation, LeukemicHEK293 CellsHistone DemethylasesHistonesHumansLeukemia, MyeloidMiceMice, Inbred C57BLProteomicsProto-Oncogene Proteins c-etsChromatinGATA Transcription FactorsHistone DemethylasesHistonesProto-Oncogene Proteins c-ets

Identifiers

PMID29736013
PMCPMC6029661
OpenAlexW2801743415

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.