Evidence map›Paper›PMID 29735730›Full record

ReviewPhilosophical transactions of the Royal Society of London. Series B, Biological sciences2018

Unpicking allosteric mechanisms of homo-oligomeric proteins by determining their successive ligand binding constants.

Ranit Gruber, Amnon Horovitz

Abstract readReview
In one paragraph

Review in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. A New Model of Hemoglobin Oxygenation.Entropy (Basel, Switzerland) · 2022
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Iterative annealing mechanism explains the functions of the GroEL and RNA chaperones.Protein science : a publication of the Protein Society · 2020
    Review
  8. Article
  9. Allostery in Its Many Disguises: From Theory to Applications.Structure (London, England : 1993) · 2019
    Review
  10. Allostery and molecular machines.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ranit GruberDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel.
Amnon HorovitzDepartment of Structural Biology, Weizmann Institute of Science, Rehovot 7610001, Israel amnon.horovitz@weizmann.ac.il.ORCID 0000-0001-7952-6790

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Advances in native mass spectrometry and single-molecule techniques have made it possible in recent years to determine the values of successive ligand binding constants for large multi-subunit proteins. Given these values, it is possible to distinguish between different allosteric mechanisms and, thus, obtain insights into how various bio-molecular machines work. Here, we describe for ring-shaped homo-oligomers, in particular, how the relationship between the values of successive ligand binding constants is diagnostic for concerted, sequential and probabilistic allosteric mechanisms.This article is part of a discussion meeting issue 'Allostery and molecular machines'.

Indexed as

Allosteric RegulationModels, MolecularHumansLigandsProtein BindingProtein SubunitsLigandsProtein Subunitschaperoninscooperativitynative mass spectrometryring-shaped oligomerssingle-molecule techniques

Identifiers

PMID29735730
PMCPMC5941171

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.