Evidence map›Paper›PMID 29735663›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Linked genetic variation and not genome structure causes widespread differential expression associated with chromosomal inversions.

Iskander Said, Ashley Byrne, Victoria Serrano, Charis Cardeno, Christopher Vollmers, Russell Corbett-Detig

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genomic structural variation contributes to evolved changes in gene expression in high-altitude Tibetan sheep.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. High-resolution mapping of SrTm4, a recessive resistance gene to wheat stem rust.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  15. Karyotype differentiation in theComparative cytogenetics · 2023
    Article
  16. NewInternational journal of molecular sciences · 2022
    Article
  17. Article
  18. Article
  19. Supergene potential of a selfish centromere.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  20. The relevance of chromatin architecture to genome rearrangements inPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Iskander SaidGenomics Institute, University of California, Santa Cruz, CA 95064.
Ashley ByrneDepartment of Molecular, Cellular and Developmental Biology, University of California, Santa Cruz, CA 95064.
Victoria SerranoDepartment of Biomolecular Engineering, University of California, Santa Cruz, CA 95064.
Charis CardenoDepartment of Evolution and Ecology, University of California, Davis, CA 95616.
Christopher VollmersGenomics Institute, University of California, Santa Cruz, CA 95064.
Russell Corbett-DetigGenomics Institute, University of California, Santa Cruz, CA 95064; rucorbet@ucsc.edu.ORCID 0000-0001-6535-2478

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromosomal inversions are widely thought to be favored by natural selection because they suppress recombination between alleles that have higher fitness on the same genetic background or in similar environments. Nonetheless, few selected alleles have been characterized at the molecular level. Gene expression profiling provides a powerful way to identify functionally important variation associated with inversions and suggests candidate phenotypes. However, altered genome structure itself might also impact gene expression by influencing expression profiles of the genes proximal to inversion breakpoint regions or by modifying expression patterns genome-wide due to rearranging large regulatory domains. In natural inversions, genetic differentiation and genome structure are inextricably linked. Here, we characterize differential expression patterns associated with two chromosomal inversions found in natural

Indexed as

Biological EvolutionChromosome InversionGene Expression RegulationGenetic VariationGenome, InsectSelection, GeneticAnimalsChromosome MappingDrosophila melanogasterGenetic DriftHigh-Throughput Nucleotide SequencingPhenotypechromosomal inversionsdifferential expressiongenome structure

Identifiers

PMID29735663
PMCPMC6003460

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.