Evidence map›Paper›PMID 29734518›Full record

ArticlePlant biotechnology journal2018

Zinc finger nuclease-mediated precision genome editing of an endogenous gene in hexaploid bread wheat (Triticum aestivum) using a DNA repair template.

Yidong Ran, Nicola Patron, Pippa Kay, Debbie Wong, Margaret Buchanan, Ying-Ying Cao, Tim Sawbridge, John P Davies, John Mason, Steven R Webb and 4 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 78 citations in OpenAlex.

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  17. Genomics and transcriptomics to protect rice (Frontiers in plant science · 2022
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  19. Capturing Wheat Phenotypes at the Genome Level.Frontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Yidong RanGenovo Biotechnology Co. Ltd, Tianjin, China.
Nicola PatronEarlham Institute, Norwich Science Park, Norfolk, UK.ORCID 0000-0002-8389-1851
Pippa KayDepartment of Economic Development, Jobs, Transport and Resources, Centre for AgriBioscience, Agriculture Victoria Research, AgriBio, Bundoora, Vic., Australia.
Debbie WongDepartment of Economic Development, Jobs, Transport and Resources, Centre for AgriBioscience, Agriculture Victoria Research, AgriBio, Bundoora, Vic., Australia.
Margaret BuchananDepartment of Economic Development, Jobs, Transport and Resources, Centre for AgriBioscience, Agriculture Victoria Research, AgriBio, Bundoora, Vic., Australia.
Ying-Ying CaoDepartment of Economic Development, Jobs, Transport and Resources, Centre for AgriBioscience, Agriculture Victoria Research, AgriBio, Bundoora, Vic., Australia.
Tim SawbridgeDepartment of Economic Development, Jobs, Transport and Resources, Centre for AgriBioscience, Agriculture Victoria Research, AgriBio, Bundoora, Vic., Australia.
John P DaviesDow AgroSciences LLC, Indianapolis, IN, USA.
John MasonDepartment of Economic Development, Jobs, Transport and Resources, Centre for AgriBioscience, Agriculture Victoria Research, AgriBio, Bundoora, Vic., Australia.
Steven R WebbDow AgroSciences LLC, Indianapolis, IN, USA.
German SpangenbergDepartment of Economic Development, Jobs, Transport and Resources, Centre for AgriBioscience, Agriculture Victoria Research, AgriBio, Bundoora, Vic., Australia.
William M AinleyDow AgroSciences LLC, Indianapolis, IN, USA.
Terence A WalshDow AgroSciences LLC, Indianapolis, IN, USA.ORCID 0000-0003-2640-8189
Matthew J HaydenDepartment of Economic Development, Jobs, Transport and Resources, Centre for AgriBioscience, Agriculture Victoria Research, AgriBio, Bundoora, Vic., Australia.ORCID 0000-0003-3117-5500
Agriculture Victoria · AULa Trobe University · AUEarlham Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sequence-specific nucleases have been used to engineer targeted genome modifications in various plants. While targeted gene knockouts resulting in loss of function have been reported with relatively high rates of success, targeted gene editing using an exogenously supplied DNA repair template and site-specific transgene integration has been more challenging. Here, we report the first application of zinc finger nuclease (ZFN)-mediated, nonhomologous end-joining (NHEJ)-directed editing of a native gene in allohexaploid bread wheat to introduce, via a supplied DNA repair template, a specific single amino acid change into the coding sequence of acetohydroxyacid synthase (AHAS) to confer resistance to imidazolinone herbicides. We recovered edited wheat plants having the targeted amino acid modification in one or more AHAS homoalleles via direct selection for resistance to imazamox, an AHAS-inhibiting imidazolinone herbicide. Using a cotransformation strategy based on chemical selection for an exogenous marker, we achieved a 1.2% recovery rate of edited plants having the desired amino acid change and a 2.9% recovery of plants with targeted mutations at the AHAS locus resulting in a loss-of-function gene knockout. The latter results demonstrate a broadly applicable approach to introduce targeted modifications into native genes for nonselectable traits. All ZFN-mediated changes were faithfully transmitted to the next generation.

Indexed as

DNA RepairGene EditingGenes, PlantGenome, PlantPolyploidyTriticumZinc Fingersacetohydroxyacid synthasegenome editingherbicide tolerancenonhomologous end-joiningwheatzinc finger nuclease

Identifiers

PMID29734518
PMCPMC6230953
OpenAlexW2800902110

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.