Evidence map›Paper›PMID 29734037›Full record

ArticlePhytochemistry2018

PepSAVI-MS reveals anticancer and antifungal cycloviolacins in Viola odorata.

Nicole C Parsley, Christine L Kirkpatrick, Christopher M Crittenden, Javad Ghassemi Rad, David W Hoskin, Jennifer S Brodbelt, Leslie M Hicks

Open access · greenAbstract read
In one paragraph

Article in Phytochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 69 citations in OpenAlex.

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  7. Protein and peptide letters · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Nicole C ParsleyDepartment of Chemistry, University of North Carolina at Chapel Hill, NC, USA.
Christine L KirkpatrickDepartment of Chemistry, University of North Carolina at Chapel Hill, NC, USA.
Christopher M CrittendenDepartment of Chemistry, University of Texas at Austin, TX, USA.
Javad Ghassemi RadDepartment of Pathology, Dalhousie University, Nova Scotia, Canada.
David W HoskinDepartment of Pathology, Dalhousie University, Nova Scotia, Canada; Department of Microbiology and Immunology, Dalhousie University, Nova Scotia, Canada; Department of Surgery, Dalhousie University, Nova Scotia, Canada.
Jennifer S BrodbeltDepartment of Chemistry, University of Texas at Austin, TX, USA.
Leslie M HicksDepartment of Chemistry, University of North Carolina at Chapel Hill, NC, USA. Electronic address: lmhicks@unc.edu.
University of North Carolina at Chapel Hill · USDalhousie University · CAThe University of Texas at Austin · US

Funding

MOLECULAR AND CELLULAR BIOPHYSICS TRAINING PROGRAMT32GM008570 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KUHLMAN, BRIAN A, SLEP, KEVIN C · 1995 to 2022
$5.1M
PepSAVI-MS for discovery of novel botanical antimicrobial peptidesR01GM125814 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HICKS, LESLIE M. · 2018 to 2022
$1.6M
NIGMS NIH HHS R01 GM125814NIGMS NIH HHS T32 GM008570
6 · The paper itself

Abstract

Widespread resistance to antimicrobial and cancer therapeutics is evolving in every country worldwide and has a direct impact on global health, agriculture and the economy. The specificity and selectivity of bioactive peptide natural products present a possible stopgap measure to address the ongoing deficit of new therapeutic compounds. PepSAVI-MS (Statistically-guided bioActive Peptides prioritized VIa Mass Spectrometry) is an adaptable method for the analysis of natural product libraries to rapidly identify bioactive peptides. This pipeline was validated via screening of the cyclotide-rich botanical species Viola odorata and identification of the known antimicrobial and anticancer cyclotide cycloviolacin O2. Herein we present and validate novel bioactivities of the anthelmintic V. odorata cyclotide, cycloviolacin O8 (cyO8), including micromolar anticancer activity against PC-3 prostate, MDA-MB-231 breast, and OVCAR-3 ovarian cancer cell lines and antifungal activity against the agricultural pathogen Fusarium graminearum. A reduction/alkylation strategy in tandem with PepSAVI-MS analysis also revealed several previously uncharacterized putatively bioactive cyclotides. Downstream implementation of ultraviolet photodissociation (UVPD) tandem mass spectrometry is demonstrated for cyO8 as a method to address traditionally difficult-to-sequence cyclotide species. This work emphasizes the therapeutic and agricultural potential of natural product bioactive peptides and the necessity of developing robust analytical tools to deconvolute nature's complexity.

Indexed as

Antifungal AgentsAntineoplastic Agents, PhytogenicCell Line, TumorCell ProliferationCell SurvivalCyclotidesDose-Response Relationship, DrugDrug Screening Assays, AntitumorFibroblastsFusariumHumansMolecular StructurePeptide LibraryStructure-Activity RelationshipTandem Mass SpectrometryViolaAntifungal AgentsAntineoplastic Agents, PhytogenicCyclotidescycloviolacin O2Peptide LibraryAntimicrobial peptidesBioactive peptidesCyclotidesMass spectometryViola odorata, Violaceae

Identifiers

PMID29734037
PMCPMC6003877
OpenAlexW2803969520

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.