ReviewApplications in plant sciences2018
A guide to sequence your favorite plant genomes.
Review in Applications in plant sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 2 of them syntheses that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
36 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Meta-Analysis Reveals Challenges and Gaps for Genome-to-Phenome Research Underpinning Plant Drought Response.International journal of molecular sciences · 2022Pooled it
- FACE facts hold for multiple generations; Evidence from natural COGlobal change biology · 2019Pooled it
- The annotated, chromosome-scale Salicornia depressa (American pickleweed) genome.The Journal of heredity · 2026Article
- Flow Cytometry and K-mer-Based Approach for Genome Size Estimation of Clusterbean: A Case Study.Methods in molecular biology (Clifton, N.J.) · 2026Article
- Ionic liquid-assisted seed genomic DNA extraction for advanced sequencing applications.Plant methods · 2025Article
- Development of genomic and genetic resources facilitating molecular genetic studies on untapped Myanmar rice germplasms.Breeding science · 2024Article
- LocoGSE, a sequence-based genome size estimator for plants.Frontiers in plant science · 2024Article
- Nanopore sequencing technology and its applications.MedComm · 2023Review
- Era of gapless plant genomes: innovations in sequencing and mapping technologies revolutionize genomics and breeding.Current opinion in biotechnology · 2023Review
- The Plant DNA C-Values Database: A One-Stop Shop for Plant Genome Size Data.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Normalized Workflow to Optimize Hybrid De Novo Transcriptome Assembly for Non-Model Species: A Case Study inPlants (Basel, Switzerland) · 2022Article
- The first genome for the Cape PrimrosePlant direct · 2022Article
- Green plant genomes: What we know in an era of rapidly expanding opportunities.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
- Novel Approaches for Species Concepts and Delimitation in Polyploids and Hybrids.Plants (Basel, Switzerland) · 2022Review
- Hairy CRISPR: Genome Editing in Plants Using Hairy Root Transformation.Plants (Basel, Switzerland) · 2021Review
- Complete Chloroplast Genomes ofGenes · 2021Article
- Article
- The genome of a thorny species: comparative genomic analysis among South and North American Cactaceae.Planta · 2021Article
- The Diversity of Plant Sex Chromosomes Highlighted through Advances in Genome Sequencing.Genes · 2021Review
- Genome Assembly and Sex-Determining Region of Male and FemaleFrontiers in plant science · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the rapid development of sequencing technology and the plummeting cost, assembling whole genomes from non-model plants will soon become routine for plant systematists and evolutionary biologists. Here we summarize and compare several of the latest genome sequencing and assembly approaches, offering a practical guide on how to approach a genome project. We also highlight certain precautions that need to be taken before investing time and money into a genome project.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.