Evidence map›Paper›PMID 29731656›Full record

ArticleThe application of clinical genetics2018

Determination of genotypic and clinical characteristics of Colombian patients with mucopolysaccharidosis IVA.

Sandra M Tapiero-Rodriguez, Johanna C Acosta Guio, Gloria Liliana Porras-Hurtado, Natalia García, Martha Solano, Harry Pachajoa, Harvy M Velasco

Open access · goldAbstract read
In one paragraph

Article in The application of clinical genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Mucopolysaccharidosis IVA: Current Disease Models and Drawbacks.International journal of molecular sciences · 2023
    Review
  3. Article
  4. Review
  5. Article
  6. Ophthalmic genetics in South America.American journal of medical genetics. Part C, Seminars in medical genetics · 2020
    Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Sandra M Tapiero-RodriguezUniversidad Nacional de Colombia, Departamento de morfología, Maestría de genética humana, Bogotá.
Johanna C Acosta GuioUniversidad Nacional de Colombia, Departamento de morfología, Maestría de genética humana, Bogotá.
Gloria Liliana Porras-HurtadoFamily Compensation Fund of Risaralda, Pereira.
Natalia GarcíaFaculty of Medicine, Manizales University, Manizales.
Martha SolanoDepartment of Neuropediatrics, Cardioinfantil Foundation, Bogotá.
Harry PachajoaCentro de Investigaciones en Anomalías Congénitas y Enfermedades Raras, Universidad ICESI y Fundación Valle del Lili, Cali, Colombia.
Harvy M VelascoUniversidad Nacional de Colombia, Departamento de morfología, Maestría de genética humana, Bogotá.
Universidad Nacional de Colombia · COFundación Valle del Lili · COInstitute of Cardiology · COTechnological University of Pereira · COUniversidad Autonoma de Manizales · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAs mucopolysaccharidosis IVA (MPS IVA) is the most frequent MPS in Colombia, this paper aims to describe its clinical and mutational characteristics in 32 diagnosed patients included in this study.

methodsGenotyping was completed by amplification and Sanger sequencing of the GALNS gene. The SWISS-model platform was used for bioinformatic analysis, and mutant proteins were generated by homology from the wild-type GALNS code 4FDI template from the Protein Data Bank (PDB) database. Docking was performed using the GalNAc6S ligand (PubChem CID: 193456) by AutoDock Vina 1.0 and visualized in PyMOL and LigPlot+.

resultsEleven variants were identified, and one new pathogenic variant was described in the heterozygous state, which is consistent with genotype c. 319 G> T or p.Ala107Ser. The pathogenic variant c.901G>T or p.Gly301Cys was the most frequent mutation with 51.6% of alleles. Docking revealed affinity energy of -5.9 Kcal/mol between wild-type GALNS and the G6S ligand. Some changes were evidenced at the intermolecular interaction level, and affinity energy for each mutant decreased.

conclusionClinical variables and genotypic analysis were similar to those reported for other world populations. Genotypic data showed greater allelic heterogeneity than those previously reported. Bioinformatics tools showed differences in the binding interactions of mutant proteins with the G6S ligand, in regard the wild-type GALNS.

Indexed as

GALNSlysosomal storage disorderMorquio syndromemucopolysaccharidosis IVAmutation

Identifiers

PMID29731656
PMCPMC5926073
OpenAlexW2802114749

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.