Evidence map›Paper›PMID 29730763›Full record

ArticleVirus genes2018

A correlation between capsid protein VP2 and the plaque morphology of African horse sickness virus in cell culture.

Mathilde L Schade-Weskott, Antoinette van Schalkwyk, J J O Koekemoer

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mathilde L Schade-WeskottAgricultural Research Council - Onderstepoort Veterinary Institute, 100 Old Soutpan Rd, Pretoria, South Africa. matschade@gmail.com.ORCID http://orcid.org/0000-0003-4130-6543
Antoinette van SchalkwykAgricultural Research Council - Onderstepoort Veterinary Institute, 100 Old Soutpan Rd, Pretoria, South Africa.
J J O KoekemoerAgricultural Research Council - Onderstepoort Veterinary Institute, 100 Old Soutpan Rd, Pretoria, South Africa.
Onderstepoort Veterinary Institute · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The attenuated live virus vaccine that is used in South Africa to protect against African horse sickness infection was developed more than 50 years ago. With the selection of the vaccine strains by cell culture passage, a correlation between the size of plaques formed in monolayer Vero cultures and attenuation of virus virulence in horses was found. The large plaque phenotype was used as an indication of cell culture adaptation and strongly correlated with attenuation of virulence in horses. There was never any investigation into the genetic causes of either the variation in plaque size, or the loss of virulence. An understanding of the underlying mechanisms of attenuation would benefit the production of a safer AHSV vaccine. To this end, the genomes of different strains of two African horse sickness isolates, producing varying plaque sizes, were compared and the differences between them identified. This comparison suggested that proteins VP2, VP3, VP5 and NS3 were most likely involved in the determination of the plaque phenotype. Comparison between genome sequences (obtained from GenBank) of low and high passage strains from two additional serotypes indicated that VP2 was the only protein with amino acid substitutions in all four serotypes. The amino acid substitutions all occurred within the same hydrophilic area, resulting in increased hydrophilicity of VP2 in the large plaque strains.

Indexed as

PhenotypeAfrican Horse SicknessAfrican Horse Sickness VirusAmino Acid SequenceAmino Acid SubstitutionAnimalsAntigens, ViralCapsid ProteinsCell LineCells, CulturedCricetinaeGenome, ViralPolymorphism, Single NucleotideSequence Analysis, DNASerogroupViral Plaque AssayAntigens, ViralCapsid ProteinsVP2 protein, African horse sickness virusAfrican horse sickness virusAttenuationPlaque phenotypeVP2-gene

Identifiers

PMID29730763
OpenAlexW2801758564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.