Evidence map›Paper›PMID 29728747›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2018

Multi-year linkage and association mapping confirm the high number of genomic regions involved in oilseed rape quantitative resistance to blackleg.

Vinod Kumar, Sophie Paillard, Berline Fopa-Fomeju, Cyril Falentin, Gwenaëlle Deniot, Cécile Baron, Patrick Vallée, Maria J Manzanares-Dauleux, Régine Delourme

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Article
  6. Article
  7. Current issues in molecular biology · 2023
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  8. "Late" effectors fromPlant direct · 2022
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  11. Metabolic Capacity DifferentiatesPathogens (Basel, Switzerland) · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Enhancing backcross programs through increased recombination.Genetics, selection, evolution : GSE · 2021
    Article
  16. TheFrontiers in plant science · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Exploring Mechanisms of Quantitative Resistance toPlants (Basel, Switzerland) · 2020
    Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Vinod KumarIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France.
Sophie PaillardIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France.
Berline Fopa-FomejuIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France.
Cyril FalentinIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France.
Gwenaëlle DeniotIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France.
Cécile BaronIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France.
Patrick ValléeIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France.
Maria J Manzanares-DauleuxIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France.
Régine DelourmeIGEPP, AGROCAMPUS OUEST, INRA, Univ Rennes, 35650, Le Rheu, France. Regine.Delourme@inra.fr.ORCID http://orcid.org/0000-0003-2354-3764

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageA repertoire of the genomic regions involved in quantitative resistance to Leptosphaeria maculans in winter oilseed rape was established from combined linkage-based QTL and genome-wide association (GWA) mapping. Linkage-based mapping of quantitative trait loci (QTL) and genome-wide association studies are complementary approaches for deciphering the genomic architecture of complex agronomical traits. In oilseed rape, quantitative resistance to blackleg disease, caused by L. maculans, is highly polygenic and is greatly influenced by the environment. In this study, we took advantage of multi-year data available on three segregating populations derived from the resistant cv Darmor and multi-year data available on oilseed rape panels to obtain a wide overview of the genomic regions involved in quantitative resistance to this pathogen in oilseed rape. Sixteen QTL regions were common to at least two biparental populations, of which nine were the same as previously detected regions in a multi-parental design derived from different resistant parents. Eight regions were significantly associated with quantitative resistance, of which five on A06, A08, A09, C01 and C04 were located within QTL support intervals. Homoeologous Brassica napus genes were found in eight homoeologous QTL regions, which corresponded to 657 pairs of homoeologous genes. Potential candidate genes underlying this quantitative resistance were identified. Genomic predictions and breeding are also discussed, taking into account the highly polygenic nature of this resistance.

Indexed as

Genetic LinkageQuantitative Trait LociAscomycotaBrassica napusChromosome MappingDisease ResistanceGenetic Association StudiesPlant Diseases

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.