Evidence map›Paper›PMID 29728618›Full record

ArticleNature communications2018

Defining a conformational ensemble that directs activation of PPARγ.

Ian M Chrisman, Michelle D Nemetchek, Ian Mitchelle S de Vera, Jinsai Shang, Zahra Heidari, Yanan Long, Hermes Reyes-Caballero, Rodrigo Galindo-Murillo, Thomas E Cheatham, Anne-Laure Blayo and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. The Impact of Forever Chemicals on Protein Structure and Function.International journal of molecular sciences · 2026
    Review
  7. Analytical chemistry · 2026
    Article
  8. Article
  9. Article
  10. Multiple binding modes underlieFrontiers in bioinformatics · 2026
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ian M ChrismanBiochemistry and Biophysics Graduate Program, The University of Montana, Missoula, MT, 59812, USA.
Michelle D NemetchekBiochemistry and Biophysics Graduate Program, The University of Montana, Missoula, MT, 59812, USA.
Ian Mitchelle S de VeraDepartment of Integrative Structural and Computational Biology, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Jinsai ShangDepartment of Integrative Structural and Computational Biology, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Zahra HeidariCenter for Biomolecular Structure and Dynamics, The University of Montana, Missoula, MT, 59812, USA.
Yanan LongDepartment of Integrative Structural and Computational Biology, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.ORCID http://orcid.org/0000-0002-7171-0443
Hermes Reyes-CaballeroDepartment of Integrative Structural and Computational Biology, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Rodrigo Galindo-MurilloDepartment of Medicinal Chemistry, University of Utah, Salt Lake City, UT, 84112, USA.ORCID http://orcid.org/0000-0001-5847-4143
Thomas E CheathamDepartment of Medicinal Chemistry, University of Utah, Salt Lake City, UT, 84112, USA.
Anne-Laure BlayoDepartment of Molecular Medicine, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Youseung ShinDepartment of Molecular Medicine, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Jakob FuhrmannDepartment of Integrative Structural and Computational Biology, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Patrick R GriffinDepartment of Integrative Structural and Computational Biology, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Theodore M KameneckaDepartment of Molecular Medicine, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.
Douglas J KojetinDepartment of Integrative Structural and Computational Biology, Scripps Florida, The Scripps Research Institute, Jupiter, FL, 33458, USA.ORCID http://orcid.org/0000-0001-8058-6168
Travis S HughesCenter for Biomolecular Structure and Dynamics, The University of Montana, Missoula, MT, 59812, USA. travis.hughes@umontana.edu.ORCID http://orcid.org/0000-0002-5764-5884

Funding

Surveillance genome sequencing to detect SARS-CoV-2 virus variants in MontanaP20GM103546 · NIGMS · UNIVERSITY OF MONTANA · PI BOWLER, BRUCE E · 2012 to 2021
$19.2M
Molecular Characterization of Novel Insulin SensitizersR01DK105825 · NIDDK · SCRIPPS FLORIDA · PI GRIFFIN, PATRICK ROBERT · 2015 to 2019
$2.9M
Structure and Function of Alternate-Site Binding of Anti-Diabetic PPARG LigandsR01DK101871 · NIDDK · SCRIPPS FLORIDA · PI KOJETIN, DOUGLAS · 2014 to 2018
$2.1M
Connecting the functional effects of drugs to how they change PPAR gammaR00DK103116 · NIDDK · UNIVERSITY OF MONTANA · PI HUGHES, TRAVIS SHANE · 2016 to 2018
$727k
Connecting the functional effects of drugs to how they change PPAR gammaK99DK103116 · NIDDK · SCRIPPS FLORIDA · PI HUGHES, TRAVIS SHANE · 2014 to 2015
$178k
NIDDK NIH HHS K99 DK103116NIDDK NIH HHS R00 DK103116NIDDK NIH HHS R01 DK101871NIDDK NIH HHS R01 DK105825NIGMS NIH HHS P20 GM103546
6 · The paper itself

Abstract

The nuclear receptor ligand-binding domain (LBD) is a highly dynamic entity. Crystal structures have defined multiple low-energy LBD structural conformations of the activation function-2 (AF-2) co-regulator-binding surface, yet it remains unclear how ligand binding influences the number and population of conformations within the AF-2 structural ensemble. Here, we present a nuclear receptor co-regulator-binding surface structural ensemble in solution, viewed through the lens of fluorine-19 (

Indexed as

Molecular Dynamics SimulationProtein ConformationAmino Acid SequenceBinding SitesHumansLigandsMagnetic Resonance SpectroscopyPeptidesPPAR gammaProtein BindingProtein MultimerizationThermodynamicsLigandsPeptidesPPAR gamma

Identifiers

PMID29728618
PMCPMC5935666

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.