Evidence map›Paper›PMID 29728455›Full record

ArticleJournal of cell science2018

Microtubules as platforms for probing liquid-liquid phase separation in cells - application to RNA-binding proteins.

Alexandre Maucuer, Bénédicte Desforges, Vandana Joshi, Mirela Boca, Dmitry A Kretov, Loic Hamon, Ahmed Bouhss, Patrick A Curmi, David Pastré

Open access · hybridAbstract readEvaluation Study
In one paragraph

Article in Journal of cell science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  5. Review
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  7. Article
  8. Liquid-liquid phase separation of tau: From molecular biophysics to physiology and disease.Protein science : a publication of the Protein Society · 2021
    Review
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 3 countries.

Alexandre MaucuerSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France.
Bénédicte DesforgesSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France.
Vandana JoshiSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France.
Mirela BocaSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France.ORCID 0000-0001-9320-988X
Dmitry A KretovSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France.
Loic HamonSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France.
Ahmed BouhssSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France.
Patrick A CurmiSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France.
David PastréSABNP Lab, Univ Evry, INSERM U1204, Université Paris-Saclay, 91025 Evry, France david.pastre@univ-evry.fr.ORCID 0000-0002-3348-9514
Inserm · FRBoston University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Liquid-liquid phase separation enables compartmentalization of biomolecules in cells, notably RNA and associated proteins in the nucleus. Besides having critical functions in RNA processing, there is a major interest in deciphering the molecular mechanisms of compartmentalization orchestrated by RNA-binding proteins such as TDP-43 (also known as TARDBP) and FUS because of their link to neuron diseases. However, tools for probing compartmentalization in cells are lacking. Here, we developed a method to analyze the mixing and demixing of two different phases in a cellular context. The principle is the following: RNA-binding proteins are confined on microtubules and quantitative parameters defining their spatial segregation are measured along the microtubule network. Through this approach, we found that four mRNA-binding proteins, HuR (also known as ELAVL1), G3BP1, TDP-43 and FUS form mRNA-rich liquid-like compartments on microtubules. TDP-43 is partly miscible with FUS but immiscible with either HuR or G3BP1. We also demonstrate that mRNA is essential to capture the mixing and demixing behavior of mRNA-binding proteins in cells. Taken together, we show that microtubules can be used as platforms to understand the mechanisms underlying liquid-liquid phase separation and their deregulation in human diseases.

Indexed as

CellsCytoplasmic GranulesHeLa CellsHumansMicroscopy, FluorescenceMicrotubulesProtein BindingProtein TransportRNA-Binding ProteinsRNA, MessengerRNA-Binding ProteinsRNA, MessengerAmyotrophic lateral sclerosisCellular compartmentIntrinsically disordered regionsStress granules

Identifiers

PMID29728455
PMCPMC6031325
OpenAlexW2803031319

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.