Evidence map›Paper›PMID 29728454›Full record

ArticlePlant physiology2018

Auxin Contributes to the Intraorgan Regulation of Gene Expression in Response to Shade.

Sujung Kim, Nobuyoshi Mochizuki, Ayumi Deguchi, Atsushi J Nagano, Tomomi Suzuki, Akira Nagatani

Abstract read
In one paragraph

Article in Plant physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. A Spotlight on Photobiology.Plant physiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sujung KimGraduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Nobuyoshi MochizukiGraduate School of Science, Kyoto University, Kyoto 606-8502, Japan.ORCID 0000-0002-6238-7584
Ayumi DeguchiFaculty of Agriculture, Ryukoku University, Otsu 520-2194, Japan.ORCID 0000-0001-6732-8842
Atsushi J NaganoFaculty of Agriculture, Ryukoku University, Otsu 520-2194, Japan.
Tomomi SuzukiGraduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
Akira NagataniGraduate School of Science, Kyoto University, Kyoto 606-8502, Japan nagatani@physiol.bot.kyoto-u.ac.jp.ORCID 0000-0002-4284-3140

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants sense and respond to light via multiple photoreceptors including phytochrome. The decreased ratio of red to far-red light that occurs under a canopy triggers shade-avoidance responses, which allow plants to compete with neighboring plants. The leaf acts as a photoperceptive organ in this response. In this study, we investigated how the shade stimulus is spatially processed within the cotyledon. We performed transcriptome analysis on microtissue samples collected from vascular and nonvascular regions of Arabidopsis (

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCluster AnalysisCotyledonGene Expression ProfilingIndoleacetic AcidsLightMesophyll CellsOxygenasesPlant EpidermisPlants, Genetically ModifiedArabidopsis ProteinsIndoleacetic AcidsOxygenasesYUC protein, Arabidopsis

Identifiers

PMID29728454
PMCPMC6001317

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.