Evidence map›Paper›PMID 29728365›Full record

ArticleGenome research2018

A CRISPR knockout screen identifies SETDB1-target retroelement silencing factors in embryonic stem cells.

Kei Fukuda, Akihiko Okuda, Kosuke Yusa, Yoichi Shinkai

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 78 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Kei FukudaCellular Memory Laboratory, Cluster for Pioneering Research, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
Akihiko OkudaDivision of Developmental Biology, Research Center for Genomic Medicine, Saitama Medical University, 1397-1 Yamane Hidaka Saitama 350-1241, Japan.
Kosuke YusaWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, United Kingdom.
Yoichi ShinkaiCellular Memory Laboratory, Cluster for Pioneering Research, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
Pioneer (Japan) · JPSaitama Medical University · JPWellcome Sanger Institute · GB

Funding

Wellcome Trust WT098051
6 · The paper itself

Abstract

In mouse embryonic stem cells (mESCs), the expression of provirus and endogenous retroelements is epigenetically repressed. Although many cellular factors involved in retroelement silencing have been identified, the complete molecular mechanism remains elusive. In this study, we performed a genome-wide CRISPR screen to advance our understanding of retroelement silencing in mESCs. The Moloney murine leukemia virus (MLV)-based retroviral vector MSCV-

Indexed as

Epigenesis, GeneticAnimalsClustered Regularly Interspaced Short Palindromic RepeatsGene SilencingHistone-Lysine N-MethyltransferaseMiceMoloney murine leukemia virusMouse Embryonic Stem CellsRepressor ProteinsRetroelementsTranscription FactorsHistone-Lysine N-MethyltransferaseMORC2 protein, mouseRepressor ProteinsResf1 protein, mouseRetroelementsSETDB1 protein, mouseTranscription Factors

Identifiers

PMID29728365
PMCPMC5991520
OpenAlexW2803032648

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.