Evidence map›Paper›PMID 29728113›Full record

ArticleBMC veterinary research2018

Characterization of the DNA binding activity of structural protein VP1 from chicken anaemia virus.

Guan-Hua Lai, Ming-Kuem Lin, Yi-Yang Lien, Jai-Hong Cheng, Fang-Chun Sun, Meng-Shiunn Lee, Hsi-Jien Chen, Meng-Shiou Lee

Abstract read
In one paragraph

Article in BMC veterinary research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Role of Apoptin in Chicken Anemia Virus Replication.Pathogens (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Guan-Hua LaiGraduate Institute of Biotechnology, National Chung Hsing University, Taichung, 40402, Taiwan.
Ming-Kuem LinDepartment of Chinese Pharmaceutical Science and Chinese Medicine Resources, China Medical University, 91, Hsueh-Shih Road, Taichung, Taiwan.
Yi-Yang LienDepartment of Veterinary Medicine, National Pingtung University of Science and Technology, Pingtung, 91201, Taiwan.
Jai-Hong ChengCenter for Shockwave Medicine and Tissue Engineering, Department of Medical Research, Kaohsiung Chang Gung Memorial Hospital and Chang Gung University College of Medicine, Kaohsiung, 83301, Taiwan.
Fang-Chun SunDepartment of Bioresources, Da-Yeh University, Changhua, 51591, Taiwan.
Meng-Shiunn LeeResearch Assistance Center, Show Chwan Memorial Hospital, Changhua, 500, Taiwan.
Hsi-Jien ChenDepartment of Safety, Health and Environmental Engineering, Ming Chi University of Technology, New Taipei, 24301, Taiwan.
Meng-Shiou LeeDepartment of Chinese Pharmaceutical Science and Chinese Medicine Resources, China Medical University, 91, Hsueh-Shih Road, Taichung, Taiwan. leemengshiou@mail.cmu.edu.tw.ORCID http://orcid.org/0000-0003-3470-4121

Funding

Ministry of Science and Technology, Taiwan NSC101-2321-B-039-007-Ministry of Science and Technology, Taiwan NSC102-2321-B-039-007
6 · The paper itself

Abstract

backgroundChicken anaemia virus (CAV) is commonly found in poultry. VP1 is the sole structural protein of CAV, which is the major component responsible for capsid assembly. The CAV virion consists of the VP1 protein and a viral genome. However, there is currently no information on the protein-nucleic acid interactions between VP1 and DNA molecules.

resultsIn this study, the recombinant VP1 protein of CAV was expressed and purified to characterize its DNA binding activity. When VP1 protein was incubated with a DNA molecule, the DNA molecule exhibited retarded migration on an agarose gel. Regardless of whether the sequence of the viral genome was involved in the DNA molecule, DNA retardation was not significantly influenced. This outcome indicated VP1 is a DNA binding protein with no sequence specificity. Various DNA molecules with different conformations, such as circular dsDNA, linear dsDNA, linear ssDNA and circular ssDNA, interacted with VP1 proteins according to the results of a DNA retardation assay. Further quantification of the amount of VP1 protein required for DNA binding, the circular ssDNA demonstrated a high affinity for the VP1 protein. The preferences arranged in the order of affinity for the VP1 protein with DNA are circular ssDNA, linear ssDNA, supercoiled circular dsDNA, open circular DNA and linear dsDNA.

conclusionsThe results of this study demonstrated that the interaction between VP1 and DNA molecules exhibited various binding preferences that were dependent on the structural conformation of DNA. Taken together, the results of this report are the first to demonstrate that VP1 has no sequence-specific DNA binding activity. The particular binding preferences of VP1 might play multiple roles in DNA replication or encapsidation during the viral life cycle.

Indexed as

Capsid ProteinsChicken anemia virusDNA-Binding ProteinsDNA, ViralProtein BindingRecombinant ProteinsCapsid ProteinsDNA-Binding ProteinsDNA, ViralRecombinant ProteinsVP1 protein, Chicken anemia virusCapsid proteinChicken anaemia virusDNA bindingVP1

Identifiers

PMID29728113
PMCPMC5936033

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.