Evidence map›Paper›PMID 29727773›Full record

ArticleAquatic toxicology (Amsterdam, Netherlands)2018

Genome-wide scan reveals signatures of selection related to pollution adaptation in non-model estuarine Atlantic killifish (Fundulus heteroclitus).

J S Osterberg, K M Cammen, T F Schultz, B W Clark, R T Di Giulio

Open access · greenAbstract read
In one paragraph

Article in Aquatic toxicology (Amsterdam, Netherlands), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

J S OsterbergDuke University, Nicholas School of the Environment, Duke Superfund Research Center, Durham, NC, 27708, USA; Duke University, Nicholas School of the Environment, Duke Marine Lab, Beaufort, NC, 28516, USA. Electronic address: jso6@duke.edu.
K M CammenDuke University, Nicholas School of the Environment, Duke Marine Lab, Beaufort, NC, 28516, USA.
T F SchultzDuke University, Nicholas School of the Environment, Duke Marine Lab, Beaufort, NC, 28516, USA.
B W ClarkDuke University, Nicholas School of the Environment, Duke Superfund Research Center, Durham, NC, 27708, USA.
R T Di GiulioDuke University, Nicholas School of the Environment, Duke Superfund Research Center, Durham, NC, 27708, USA.
Duke University · US

Funding

Zebrafish as a Detector of Organophosphate ExposureP42ES010356 · NIEHS · DUKE UNIVERSITY · PI AMY H HERRING · 2000 to 2026
$56.2M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
NIEHS NIH HHS P42 ES010356NIH HHS S10 OD018164
6 · The paper itself

Abstract

In many human-altered ecosystems, organisms are increasingly faced with more diverse and complex environmental stressors and pollutant mixtures, to which the adaptations necessary to survive exposure are likely to be numerous and varied. Improving our understanding of the molecular mechanisms that underlie complex polygenic adaptations in natural settings requires significant toxicological, biochemical, physiological, and genomic data rarely available for non-model organisms. Here, we build upon two decades of study of adaptation to anthropogenic pollutants in a population of Atlantic killifish (Fundulus heteroclitus) that inhabits the creosote-contaminated Atlantic Wood Industries Superfund (AW) site on the Elizabeth River, Virginia in the United States. To better understand the genotypes that underlie previously characterized resistance to PCBs and PAHs, we performed Restriction site-Associated DNA sequencing (RADseq) on killifish from AW and two relatively clean reference sites (King's Creek-KC, and Mains Creek-MC). Across the genome, we analyzed over 83,000 loci and 12,000 single nucleotide polymorphisms (SNPs). Shared across both comparisons of killifish from polluted (AW) and relatively unpolluted (KC and MC) sites, we found eight genomic regions with smoothed F

Indexed as

GenomeAdaptation, PhysiologicalAnimalsCreosoteDNAEcosystemFundulidaeHeartMyocardiumPolychlorinated BiphenylsPolycyclic Aromatic HydrocarbonsPolymorphism, Single NucleotideRiversSequence Analysis, DNAWater Pollutants, ChemicalCreosoteDNAPolychlorinated BiphenylsPolycyclic Aromatic HydrocarbonsWater Pollutants, ChemicalAIPARNTElizabeth RiverPAHRADseq

Identifiers

PMID29727773
PMCPMC6957077
OpenAlexW2802348379

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.