Evidence map›Paper›PMID 29727590›Full record

ArticlePhysiological genomics2018

Determination of single embryo sex in Macaca mulatta and Mus musculus RNA-Seq transcriptome profiles.

Uros Midic, Catherine A VandeVoort, Keith E Latham

Abstract read
In one paragraph

Article in Physiological genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Uros MidicDepartment of Animal Science, Michigan State University , East Lansing, Michigan.
Catherine A VandeVoortCalifornia National Primate Research Center and Department of Obstetrics and Gynecology, University of California , Davis, California.
Keith E LathamDepartment of Animal Science, Michigan State University , East Lansing, Michigan.ORCID 0000-0003-1206-9059

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
ZONA PELLUCIDA PEPTIDES AS IMMUNOCONTRACEPTIVE ANTIGENSP51RR000169 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI HYDE, DALLAS MELVIN · 1985 to 2011
$126.2M
Primate Embryo Gene Expression ResourceR24OD012221 · OD · TEMPLE UNIV OF THE COMMONWEALTH · PI LATHAM, KEITH E · 2012 to 2016
$3.0M
Rhesus Monkey Oocyte ResourcesR24OD010967 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI VANDEVOORT, CATHERINE A · 2012 to 2014
$1.6M
NCRR NIH HHS P51 RR000169NIH HHS P51 OD011107NIH HHS R24 OD010967NIH HHS R24 OD012221
6 · The paper itself

Abstract

To account for sex as a biological variable, it is sometimes necessary to identify the sex of an embryo or embryonic cell that was used to generate libraries for RNA sequencing, without the sex being known a priori. The preferred approach for this would take advantage of the mRNA data, rather than relying on other methods that require separation and analysis of genomic DNA or diversion of limiting RNA for other assays. We describe here a method that has been optimized for this purpose in samples of rhesus monkey and mouse embryos. This method is broadly applicable to any species for which a sufficiently well characterized genome and knowledge of polymorphisms are available, and for embryos that are transcriptionally active and expressing their genome.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBlastocystFemaleGene Expression ProfilingMacaca mulattaMiceReproducibility of ResultsSequence Analysis, RNASex Determination AnalysisSingle-Cell Analysisembryo sexingnonhuman primateRNAseq

Identifiers

PMID29727590
PMCPMC6139635

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.