Evidence map›Paper›PMID 29725592›Full record

ArticleFrontiers in medicine2018

Urinary Virome Perturbations in Kidney Transplantation.

Tara K Sigdel, Neil Mercer, Sharvin Nandoe, Carrie D Nicora, Kristin Burnum-Johnson, Wei-Jun Qian, Minnie M Sarwal

Open access · goldAbstract read
In one paragraph

Article in Frontiers in medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Urine microbiome in individuals with an impaired immune system.Frontiers in cellular and infection microbiology · 2023
    Review
  2. Review
  3. Review
  4. Impact of the microbiota on solid organ transplant rejection.Current opinion in organ transplantation · 2019
    Review
  5. Review
  6. The Bladder is Not Sterile: an Update on the Urinary Microbiome.Current bladder dysfunction reports · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Tara K SigdelDepartment of Surgery, University of California, San Francisco, San Francisco, CA, United States.
Neil MercerDepartment of Surgery, University of California, San Francisco, San Francisco, CA, United States.
Sharvin NandoeDepartment of Surgery, University of California, San Francisco, San Francisco, CA, United States.
Carrie D NicoraBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States.
Kristin Burnum-JohnsonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States.
Wei-Jun QianBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States.
Minnie M SarwalDepartment of Surgery, University of California, San Francisco, San Francisco, CA, United States.
Pacific Northwest National Laboratory · USUniversity of California, San Francisco · USErasmus MC · NL

Funding

Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
Urinary Proteome Monitoring for Transplant InjuryR01DK083447 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CAMP, DAVID G, SARWAL, MINNIE M · 2010 to 2013
$2.4M
Serum protein biomarkers for predicting type 1 diabetesDP3DK110844 · NIDDK · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI QIAN, WEI-JUN · 2016 to 2016
$1.8M
NIDDK NIH HHS DP3 DK110844NIDDK NIH HHS R01 DK083447NIGMS NIH HHS P41 GM103493
6 · The paper itself

Abstract

The human microbiome is important for health and plays a role in essential metabolic functions and protection from certain pathogens. Conversely, dysbiosis of the microbiome is seen in the context of various diseases. Recent studies have highlighted that a complex microbial community containing hundreds of bacteria colonizes the healthy urinary tract, but little is known about the human urinary viruses in health and disease. To evaluate the human urinary virome in the context of kidney transplantation (tx), variations in the composition of the urinary virome were evaluated in urine samples from normal healthy volunteers as well as patients with kidney disease after they had undergone kidney tx. Liquid chromatography-mass spectrometry/mass spectrometry analysis was undertaken on a selected cohort of 142 kidney tx patients and normal healthy controls, from a larger biobank of 770 kidney biopsy matched urine samples. In addition to analysis of normal healthy control urine, the cohort of kidney tx patients had biopsy confirmed phenotype classification, coincident with the urine sample analyzed, of stable grafts (STA), acute rejection, BK virus nephritis, and chronic allograft nephropathy. We identified 37 unique viruses, 29 of which are being identified for the first time in human urine samples. The composition of the human urinary virome differs in health and kidney injury, and the distribution of viral proteins in the urinary tract may be further impacted by IS exposure, diet and environmental, dietary, or cutaneous exposure to various insecticides and pesticides.

Indexed as

biomarkerskidney transplantationproteomicsurinevirome

Identifiers

PMID29725592
PMCPMC5916966
OpenAlexW2792948782

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.