Evidence map›Paper›PMID 29723302›Full record

ArticlePloS one2018

Preserved SCN4B expression is an independent indicator of favorable recurrence-free survival in classical papillary thyroid cancer.

Yanping Gong, Jing Yang, Wenshuang Wu, Feng Liu, Anping Su, Zhihui Li, Jingqiang Zhu, Tao Wei

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Aging · 2020
    Article
  9. Review
  10. Sodium Channel NaScientific reports · 2019
    Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Integrin Subunit beta 8 (ITGB8) Upregulation Is an Independent Predictor of Unfavorable Survival of High-Grade Serous Ovarian Carcinoma Patients.Medical science monitor : international medical journal of experimental and clinical research · 2018
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yanping GongThyroid and Parathyroid Surgery Center, West China Hospital, Sichuan University, Chengdu, Sichuan, China.ORCID 0000-0002-5866-3451
Jing YangThyroid and Parathyroid Surgery Center, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Wenshuang WuThyroid and Parathyroid Surgery Center, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Feng LiuThyroid and Parathyroid Surgery Center, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Anping SuThyroid and Parathyroid Surgery Center, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Zhihui LiThyroid and Parathyroid Surgery Center, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Jingqiang ZhuThyroid and Parathyroid Surgery Center, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Tao WeiThyroid and Parathyroid Surgery Center, West China Hospital, Sichuan University, Chengdu, Sichuan, China.
Sichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Voltage-gated sodium channel β subunits (encoded by SCN1B to SCN4B genes) have been demonstrated as important multifunctional signaling molecules modulating cellular processes such as cell adhesion and cell migration. In this study, we aimed to explore the expression profiles of SCN4B in papillary thyroid cancer (PTC) and its prognostic value in terms of recurrence-free survival (RFS) in classical PTC. In addition, we also examined the potential effect of DNA methylation on its expression. A retrospective study was performed by using data from available large databases, including the Gene Expression Omnibus (GEO) datasets and the Cancer Genome Atlas (TCGA)-Thyroid Cancer (THCA). Results showed that SCN4B is downregulated at both RNA and protein level in PTC compared with normal thyroid tissues. Preserved SCN4B expression was an independent indicator of favorable RFS in patients with classical PTC, no matter as categorical variables (HR: 0.243, 95%CI: 0.107-0.551, p = 0.001) or as a continuous variable (HR: 0.684, 95%CI: 0.520-0.899, p = 0.007). The methylation status of one CpG site (Chr11: 118,022,316-318) in SCN4B DNA had a moderately negative correlation with SCN4B expression in all PTC cases (Pearson's r = -0.48) and in classical PTC cases (Pearson's r = -0.41). In comparison, SCN4B DNA copy number alterations (CNAs) were not frequent and might not influence its mRNA expression. In addition, no somatic mutation was found in SCN4B DNA. Based on these findings, we infer that preserved SCN4B expression might independently predict favorable RFS in classical PTC. Its expression might be suppressed by DNA hypermethylation, but is less likely to be influenced by DNA CNAs/mutations.

Indexed as

Gene Expression Regulation, NeoplasticAdultAgedCarcinoma, PapillaryCpG IslandsDatabases, GeneticDatasets as TopicDisease-Free SurvivalDNA MethylationDNA, NeoplasmFemaleHumansMaleMiddle AgedPrognosisRetrospective StudiesDNA, NeoplasmRNA, MessengerSCN4B protein, humanVoltage-Gated Sodium Channel beta-4 Subunit

Identifiers

PMID29723302
PMCPMC5933725
OpenAlexW2799412740

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.