Evidence map›Paper›PMID 29723301›Full record

ArticlePloS one2018

Genome-wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria × ananassa fruits.

Enriqueta Moyano, Félix J Martínez-Rivas, Rosario Blanco-Portales, Francisco Javier Molina-Hidalgo, Pablo Ric-Varas, Antonio J Matas-Arroyo, José Luis Caballero, Juan Muñoz-Blanco, Antonio Rodríguez-Franco

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Enriqueta MoyanoDepartamento de Bioquímica y Biología Molecular, Campus de Rabanales, Edificio Severo Ochoa, Universidad de Córdoba, Córdoba, Spain.ORCID 0000-0001-8773-5971
Félix J Martínez-RivasDepartamento de Bioquímica y Biología Molecular, Campus de Rabanales, Edificio Severo Ochoa, Universidad de Córdoba, Córdoba, Spain.ORCID 0000-0003-3808-9306
Rosario Blanco-PortalesDepartamento de Bioquímica y Biología Molecular, Campus de Rabanales, Edificio Severo Ochoa, Universidad de Córdoba, Córdoba, Spain.ORCID 0000-0001-7540-6417
Francisco Javier Molina-HidalgoDepartamento de Bioquímica y Biología Molecular, Campus de Rabanales, Edificio Severo Ochoa, Universidad de Córdoba, Córdoba, Spain.ORCID 0000-0003-1184-6354
Pablo Ric-VarasInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" (IHSM-UMA-CSIC), Departamento de Biología Vegetal, Universidad de Málaga, Málaga, Spain.ORCID 0000-0002-8307-1650
Antonio J Matas-ArroyoInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" (IHSM-UMA-CSIC), Departamento de Biología Vegetal, Universidad de Málaga, Málaga, Spain.
José Luis CaballeroDepartamento de Bioquímica y Biología Molecular, Campus de Rabanales, Edificio Severo Ochoa, Universidad de Córdoba, Córdoba, Spain.
Juan Muñoz-BlancoDepartamento de Bioquímica y Biología Molecular, Campus de Rabanales, Edificio Severo Ochoa, Universidad de Córdoba, Córdoba, Spain.
Antonio Rodríguez-FrancoDepartamento de Bioquímica y Biología Molecular, Campus de Rabanales, Edificio Severo Ochoa, Universidad de Córdoba, Córdoba, Spain.ORCID 0000-0002-0431-8273
University of Córdoba · ESInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NAC proteins are a family of transcription factors which have a variety of important regulatory roles in plants. They present a very well conserved group of NAC subdomains in the N-terminal region and a highly variable domain at the C-terminus. Currently, knowledge concerning NAC family in the strawberry plant remains very limited. In this work, we analyzed the NAC family of Fragaria vesca, and a total of 112 NAC proteins were identified after we curated the annotations from the version 4.0.a1 genome. They were placed into the ligation groups (pseudo-chromosomes) and described its physicochemical and genetic features. A microarray transcriptomic analysis showed six of them expressed during the development and ripening of the Fragaria x ananassa fruit. Their expression patterns were studied in fruit (receptacle and achenes) in different stages of development and in vegetative tissues. Also, the expression level under different hormonal treatments (auxins, ABA) and drought stress was investigated. In addition, they were clustered with other NAC transcription factor with known function related to growth and development, senescence, fruit ripening, stress response, and secondary cell wall and vascular development. Our results indicate that these six strawberry NAC proteins could play different important regulatory roles in the process of development and ripening of the fruit, providing the basis for further functional studies and the selection for NAC candidates suitable for biotechnological applications.

Indexed as

Gene Expression Regulation, PlantGenome, PlantTranscriptomeAbscisic AcidChromosome MappingDroughtsFragariaFruitGene Expression ProfilingGene Expression Regulation, DevelopmentalGene OntologyIndoleacetic AcidsMolecular Sequence AnnotationMultigene FamilyPlant Growth RegulatorsPlant ProteinsAbscisic AcidIndoleacetic AcidsPlant Growth RegulatorsPlant ProteinsTranscription Factors

Identifiers

PMID29723301
PMCPMC5933797
OpenAlexW2803024147

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.