Evidence map›Paper›PMID 29723294›Full record

ArticlePloS one2018

Probing the role of PPARγ in the regulation of late-onset Alzheimer's disease-associated genes.

Julio Barrera, Shobana Subramanian, Ornit Chiba-Falek

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Is Alzheimer's Disease a Liver Disease of the Brain?Journal of Alzheimer's disease : JAD · 2020
    Review
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Julio BarreraDepartment of Neurology, Duke University Medical Center, Durham, North Carolina, United States of America.
Shobana SubramanianDepartment of Neurology, Duke University Medical Center, Durham, North Carolina, United States of America.
Ornit Chiba-FalekDepartment of Neurology, Duke University Medical Center, Durham, North Carolina, United States of America.ORCID 0000-0002-2529-8785
Duke Medical Center · US

Funding

Deciphering the regulation of gene expression in the etiology of LOADR01AG057522 · NIA · DUKE UNIVERSITY · PI CHIBA-FALEK, ORNIT, LUTZ, MICHAEL WILLIAM · 2017 to 2021
$3.6M
Role of the TOMM40 poly-T variant in the pathogenesis of Alzheimer's diseaseR01AG040370 · NIA · DUKE UNIVERSITY · PI CHIBA-FALEK, ORNIT · 2013 to 2017
$2.2M
NIA NIH HHS R01 AG040370NIA NIH HHS R01 AG057522NIH HHS R01AG040370NIH HHS R01AG057522
6 · The paper itself

Abstract

Peroxisome proliferator-activated receptor-γ (PPARγ), is a transcription factor that governs pathways, such as lipid metabolism and immune response, that have been implicated in the etiology of LOAD. Previously, we established HepG2-derived cell-lines with stable knockdown of PPARγ gene, and showed an increase in mRNA levels of genes mapped in the APOE linkage disequilibrium (LD) region on chromosome 19q13.32, with the greatest effect observed for APOE-mRNA. Here, we extended the analysis using our PPARγ knockdown model system and investigated the broader effect on expression changes of genes implicated in LOAD via genome wide association studies (GWAS). We applied the nCounter gene expression assay (NanoString) using a panel of twenty-four LOAD-associated genes inferred by proximity to the top significantly associated SNPs. Two independent PPARγ knockdown cell-lines showed changes in mRNA levels of a total of seven genes compared to a control HepG2 cell-line; six of which, ABCA7, APOE, CASS4, CELF1, PTK2B, and ZCWPW1, were upregulated and one, DSG2, was downregulated upon PPARγ knockdown. Our results propose that PPARγ may act as a master regulator of the transcription of several genes involved in LOAD pathogenesis. Our study provided the premise for further analyses including a larger set of genes positioned within a wider range of linkage disequilibrium (LD) regions tagged by all LOAD significantly associated SNPs.

Indexed as

Gene Expression RegulationGenetic Predisposition to DiseaseAdaptor Proteins, Signal TransducingAge of OnsetAlzheimer DiseaseApolipoproteins EATP-Binding Cassette TransportersCELF1 ProteinDesmoglein 2Focal Adhesion Kinase 2Gene Expression ProfilingGene Knockdown TechniquesGenome-Wide Association StudyHep G2 CellsHumansLinkage DisequilibriumABCA7 protein, humanAdaptor Proteins, Signal TransducingApolipoproteins EATP-Binding Cassette TransportersCASS4 protein, humanCELF1 ProteinCELF1 protein, humanDesmoglein 2DSG2 protein, humanFocal Adhesion Kinase 2PPAR gammaPTK2B protein, humanRNA, Small Interfering

Identifiers

PMID29723294
PMCPMC5933777
OpenAlexW2799806393

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.