Evidence map›Paper›PMID 29723275›Full record

ArticlePloS one2018

Droplet-based microfluidic analysis and screening of single plant cells.

Ziyi Yu, Christian R Boehm, Julian M Hibberd, Chris Abell, Jim Haseloff, Steven J Burgess, Ivan Reyna-Llorens

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Cell Separations and Sorting.Analytical chemistry · 2020
    Review
  17. Review
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Ziyi YuDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Christian R BoehmDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Julian M HibberdDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Chris AbellDepartment of Chemistry, University of Cambridge, Cambridge, United Kingdom.
Jim HaseloffDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Steven J BurgessDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Ivan Reyna-LlorensDepartment of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-7964-7306
University of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L014130/1
6 · The paper itself

Abstract

Droplet-based microfluidics has been used to facilitate high-throughput analysis of individual prokaryote and mammalian cells. However, there is a scarcity of similar workflows applicable to rapid phenotyping of plant systems where phenotyping analyses typically are time-consuming and low-throughput. We report on-chip encapsulation and analysis of protoplasts isolated from the emergent plant model Marchantia polymorpha at processing rates of >100,000 cells per hour. We use our microfluidic system to quantify the stochastic properties of a heat-inducible promoter across a population of transgenic protoplasts to demonstrate its potential for assessing gene expression activity in response to environmental conditions. We further demonstrate on-chip sorting of droplets containing YFP-expressing protoplasts from wild type cells using dielectrophoresis force. This work opens the door to droplet-based microfluidic analysis of plant cells for applications ranging from high-throughput characterisation of DNA parts to single-cell genomics to selection of rare plant phenotypes.

Indexed as

Agrobacterium tumefaciensBacterial ProteinsCell SeparationDrug CompoundingEquipment DesignGene Expression Regulation, PlantGenes, ReporterGenomicsHigh-Throughput Screening AssaysHot TemperatureLab-On-A-Chip DevicesLuminescent ProteinsMarchantiaMicrofluidic Analytical TechniquesMicroscopy, FluorescencePlants, Genetically ModifiedBacterial ProteinsLuminescent Proteinsyellow fluorescent protein, Bacteria

Identifiers

PMID29723275
PMCPMC5933695
OpenAlexW2949700340

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.