Evidence map›Paper›PMID 29723202›Full record

ArticlePloS one2018

Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.

Jeanne B Benoit, Daniel N Frank, Mary T Bessesen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  3. Regulation of airway fumarate by host and pathogen promotesbioRxiv : the preprint server for biology · 2025
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  13. Review
  14. Genomic analyses ofMicrobial genomics · 2020
    Article
  15. Novel Research Models forFrontiers in microbiology · 2020
    Review
  16. Staphylococci: Evolving Genomes.Microbiology spectrum · 2019
    Review
  17. Interplay of nasal and rectal carriage of Staphylococcus aureus in intensive care unit patients.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Article
  18. Metabolic Adaptation in Methicillin-ResistantAmerican journal of respiratory cell and molecular biology · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jeanne B BenoitDivision of Infectious Diseases, Department of Medicine, University of Colorado Denver, Aurora, Colorado, United States of America.
Daniel N FrankDivision of Infectious Diseases, Department of Medicine, University of Colorado Denver, Aurora, Colorado, United States of America.
Mary T BessesenDivision of Infectious Diseases, Department of Medicine, University of Colorado Denver, Aurora, Colorado, United States of America.ORCID 0000-0001-9305-1293
VA Eastern Colorado Health Care System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNasal colonization by Staphylococcus aureus is a key risk factor for bacteremia. The objective of this study is to identify genomic modifications occurring in nasal carriage strains of S. aureus as they progress to bacteremia in a cohort of hospitalized patients.

methodsEight patients with S. aureus bacteremia were identified. Genomic sequences of the bloodstream isolates were compared with 57 nasal isolates collected longitudinally prior to the occurrence of bacteremia, which covered a timespan of up to 326 days before bacteremia.

resultsWithin each subject, nasal colonizing strains were closely related to bacteremia strains. Within a subject, the number of single nucleotide polymorphisms (SNPs) observed between time points was greater than within a single time point. Co-colonization and strain replacement were observed in one case. In all cases colonization progressed to bacteremia without addition of new virulence genes. In one case, a mutation in the accessory gene regulator gene caused abrogation of agr function.

conclusionS. aureus evolves in the human nares at a variable rate. Progression of S. aureus nasal colonization to nosocomial infection is seldom associated with acquisition of new virulence determinants. Mutation in the agr gene with abrogation of function was associated with progression to bacteremia in one case.

Indexed as

Evolution, MolecularGenomicsAgedAged, 80 and overBacteremiaCohort StudiesFemaleHospitalizationHumansMaleMiddle AgedNasal CavityRisk FactorsStaphylococcal InfectionsStaphylococcus aureus

Identifiers

PMID29723202
PMCPMC5933776
OpenAlexW2803099788

What OpenQuestion holds

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LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.