Evidence map›Paper›PMID 29723190›Full record

ArticlePLoS genetics2018

Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution.

Sebastian Kittelmann, Alexandra D Buffry, Franziska A Franke, Isabel Almudi, Marianne Yoth, Gonzalo Sabaris, Juan Pablo Couso, Maria D S Nunes, Nicolás Frankel, José Luis Gómez-Skarmeta and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 62 citations in OpenAlex.

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  10. Characterisation of the role and regulation ofFrontiers in cell and developmental biology · 2023
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  13. Micromanagement ofJournal of developmental biology · 2022
    Review
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  17. Developmental Robustness: The Haltere Case inFrontiers in cell and developmental biology · 2021
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Sebastian KittelmannDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford, United Kingdom.ORCID 0000-0002-2234-4539
Alexandra D BuffryDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford, United Kingdom.
Franziska A FrankeDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford, United Kingdom.
Isabel AlmudiCentro Andaluz de Biología del Desarrollo, CSIC/ Universidad Pablo de Olavide, Carretera de Utrera Km1, Sevilla, Spain.
Marianne YothDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford, United Kingdom.
Gonzalo SabarisDepartmento de Ecologia, Genetica y Evolucion, IEGEBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.
Juan Pablo CousoCentro Andaluz de Biología del Desarrollo, CSIC/ Universidad Pablo de Olavide, Carretera de Utrera Km1, Sevilla, Spain.
Maria D S NunesDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford, United Kingdom.
Nicolás FrankelDepartmento de Ecologia, Genetica y Evolucion, IEGEBA-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.
José Luis Gómez-SkarmetaCentro Andaluz de Biología del Desarrollo, CSIC/ Universidad Pablo de Olavide, Carretera de Utrera Km1, Sevilla, Spain.
Jose Pueyo-MarquesBrighton and Sussex Medical School, University of Sussex, East Sussex, Falmer, Brighton, United Kingdom.
Saad ArifDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford, United Kingdom.ORCID 0000-0003-0811-8604
Alistair P McGregorDepartment of Biological and Medical Sciences, Oxford Brookes University, Gipsy Lane, Oxford, United Kingdom.ORCID 0000-0002-2908-2420
Oxford Brookes University · GBCentro Andaluz de Biología del Desarrollo · ESConsejo Nacional de Investigaciones Científicas y Técnicas · ARBrighton and Sussex Medical School · GB

Funding

Medical Research Council MR/K001744/1
6 · The paper itself

Abstract

Convergent phenotypic evolution is often caused by recurrent changes at particular nodes in the underlying gene regulatory networks (GRNs). The genes at such evolutionary 'hotspots' are thought to maximally affect the phenotype with minimal pleiotropic consequences. This has led to the suggestion that if a GRN is understood in sufficient detail, the path of evolution may be predictable. The repeated evolutionary loss of larval trichomes among Drosophila species is caused by the loss of shavenbaby (svb) expression. svb is also required for development of leg trichomes, but the evolutionary gain of trichomes in the 'naked valley' on T2 femurs in Drosophila melanogaster is caused by reduced microRNA-92a (miR-92a) expression rather than changes in svb. We compared the expression and function of components between the larval and leg trichome GRNs to investigate why the genetic basis of trichome pattern evolution differs in these developmental contexts. We found key differences between the two networks in both the genes employed, and in the regulation and function of common genes. These differences in the GRNs reveal why mutations in svb are unlikely to contribute to leg trichome evolution and how instead miR-92a represents the key evolutionary switch in this context. Our work shows that variability in GRNs across different developmental contexts, as well as whether a morphological feature is lost versus gained, influence the nodes at which a GRN evolves to cause morphological change. Therefore, our findings have important implications for understanding the pathways and predictability of evolution.

Indexed as

Gene Expression Regulation, DevelopmentalGene Regulatory NetworksAnimalsAnimals, Genetically ModifiedAnimal StructuresDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEvolution, MolecularLarvaMicroRNAsMutationTranscription FactorsDNA-Binding ProteinsDrosophila ProteinsMicroRNAsMIRN92 microRNA, Drosophilaovo protein, DrosophilaTranscription Factors

Identifiers

PMID29723190
PMCPMC5953500
OpenAlexW2949663865

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.