Evidence map›Paper›PMID 29723088›Full record

ArticleCancer biology & therapy2018

Molecular alterations associated with chronic exposure to cigarette smoke and chewing tobacco in normal oral keratinocytes.

Pavithra Rajagopalan, Krishna Patel, Ankit P Jain, Vishalakshi Nanjappa, Keshava K Datta, Tejaswini Subbannayya, Kiran K Mangalaparthi, Anjali Kumari, Malini Manoharan, Karunakaran Coral and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer biology & therapy, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. The repertoire of mutational signatures in tobacco- and non-tobacco-induced oral cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 2 countries.

Pavithra Rajagopalana Institute of Bioinformatics, International Tech Park , Bangalor , India.
Krishna Patela Institute of Bioinformatics, International Tech Park , Bangalor , India.
Ankit P Jaina Institute of Bioinformatics, International Tech Park , Bangalor , India.
Vishalakshi Nanjappaa Institute of Bioinformatics, International Tech Park , Bangalor , India.
Keshava K Dattaa Institute of Bioinformatics, International Tech Park , Bangalor , India.
Tejaswini Subbannayyaa Institute of Bioinformatics, International Tech Park , Bangalor , India.
Kiran K Mangalaparthia Institute of Bioinformatics, International Tech Park , Bangalor , India.
Anjali Kumarid Medgenome Labs Pvt. Ltd. , Bangalore , India.
Malini Manoharand Medgenome Labs Pvt. Ltd. , Bangalore , India.
Karunakaran Corald Medgenome Labs Pvt. Ltd. , Bangalore , India.
Sakthivel Murugand Medgenome Labs Pvt. Ltd. , Bangalore , India.
Bipin Nairc School of Biotechnology , Amrita Vishwa Vidyapeetham , Kollam , India.
T S Keshava Prasada Institute of Bioinformatics, International Tech Park , Bangalor , India.ORCID 0000-0002-6206-2384
Premendu P Mathurb School of Biotechnology , Kalinga Institute of Industrial Technology , Bhubaneswar , India.
Ravi Guptad Medgenome Labs Pvt. Ltd. , Bangalore , India.
Rohit Guptad Medgenome Labs Pvt. Ltd. , Bangalore , India.
Arati Khanna-Guptad Medgenome Labs Pvt. Ltd. , Bangalore , India.
Joseph Califanoh Department of Surgery , UC San Diego, Moores Cancer Center , La Jolla , CA , USA.
David Sidranskyi Department of Otolaryngology-Head and Neck Surgery , Johns Hopkins University School of Medicine , Baltimore , MD , USA.
Harsha Gowdaa Institute of Bioinformatics, International Tech Park , Bangalor , India.
Aditi Chatterjeea Institute of Bioinformatics, International Tech Park , Bangalor , India.
Institute of Bioinformatics · INSciGenom Labs (India) · INAmrita Vishwa Vidyapeetham · INJohns Hopkins University · USPondicherry University · INUniversity of California San Diego · USYenepoya University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tobacco usage is a known risk factor associated with development of oral cancer. It is mainly consumed in two different forms (smoking and chewing) that vary in their composition and methods of intake. Despite being the leading cause of oral cancer, molecular alterations induced by tobacco are poorly understood. We therefore sought to investigate the adverse effects of cigarette smoke/chewing tobacco exposure in oral keratinocytes (OKF6/TERT1). OKF6/TERT1 cells acquired oncogenic phenotype after treating with cigarette smoke/chewing tobacco for a period of 8 months. We employed whole exome sequencing (WES) and quantitative proteomics to investigate the molecular alterations in oral keratinocytes chronically exposed to smoke/ chewing tobacco. Exome sequencing revealed distinct mutational spectrum and copy number alterations in smoke/ chewing tobacco treated cells. We also observed differences in proteomic alterations. Proteins downstream of MAPK1 and EGFR were dysregulated in smoke and chewing tobacco exposed cells, respectively. This study can serve as a reference for fundamental damages on oral cells as a consequence of exposure to different forms of tobacco.

Indexed as

BiomarkersCell Transformation, NeoplasticEnvironmental ExposureExome SequencingGene Expression ProfilingHumansKeratinocytesMouth MucosaPhenotypeProteomeProteomicsSmokingTobacco UseTranscriptomeBiomarkersProteomecarcinogenesischronic exposurehigh-throughputOrbitrap Fusionsmoking

Identifiers

PMID29723088
PMCPMC6154853
OpenAlexW2802756113

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.