Evidence map›Paper›PMID 29722815›Full record

ArticleJournal of experimental botany2018

A missense allele of KARRIKIN-INSENSITIVE2 impairs ligand-binding and downstream signaling in Arabidopsis thaliana.

Inhye Lee, Kuglae Kim, Sumin Lee, Seungjun Lee, Eunjin Hwang, Kihye Shin, Dayoung Kim, Jungki Choi, Hyunmo Choi, Jeong Seok Cha and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 37 citations in OpenAlex.

  1. Negative feedback regulation of karrikin signaling inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Molecular insights into volatile organic compound sensing and signaling in plants.The Plant journal : for cell and molecular biology · 2026
    Review
  3. The Multifaceted Impact of Karrikin Signaling in Plants.International journal of molecular sciences · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. KARRIKIN UP-REGULATED F-BOX 1 (KUF1) imposes negative feedback regulation of karrikin and KAI2 ligand metabolism inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Review
  11. A Raf-like kinase is required for smoke-induced seed dormancy inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Perception of karrikins by plants: a continuing enigma.Journal of experimental botany · 2020
    Review
  14. Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 1 country.

Inhye LeeDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Kuglae KimDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Sumin LeeDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Seungjun LeeDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Eunjin HwangDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Kihye ShinDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Dayoung KimDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Jungki ChoiDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Hyunmo ChoiDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Jeong Seok ChaDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Hoyoung KimDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Rin-A LeeDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Suyeong JeongCenter for Plant Aging Research, Institute for Basic Science (IBS), Daegu, Republic of Korea.
Jeongsik KimCenter for Plant Aging Research, Institute for Basic Science (IBS), Daegu, Republic of Korea.
Yumi KimCenter for Plant Aging Research, Institute for Basic Science (IBS), Daegu, Republic of Korea.
Hong Gil NamCenter for Plant Aging Research, Institute for Basic Science (IBS), Daegu, Republic of Korea.
Soon-Ki ParkSchool of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea.
Hyun-Soo ChoDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei University, Seoul, Republic of Korea.
Moon-Soo SohDivision of Integrative Bioscience and Biotechnology, School of Life Science, Sejong University, Seoul, Republic of Korea.
Sejong University · KRYonsei University · KRInstitute for Basic Science · KRDaegu Gyeongbuk Institute of Science and Technology · KRKyungpook National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A smoke-derived compound, karrikin (KAR), and an endogenous but as yet unidentified KARRIKIN INSENSITIVE2 (KAI2) ligand (KL) have been identified as chemical cues in higher plants that impact on multiple aspects of growth and development. Genetic screening of light-signaling mutants in Arabidopsis thaliana has identified a mutant designated as ply2 (pleiotropic long hypocotyl2) that has pleiotropic light-response defects. In this study, we used positional cloning to identify the molecular lesion of ply2 as a missense mutation of KAI2/HYPOSENSITIVE TO LIGHT, which causes a single amino acid substitution, Ala219Val. Physiological analysis and genetic epistasis analysis with the KL-signaling components MORE AXILLARY GROWTH2 (MAX2) and SUPPRESSOR OF MAX2 1 suggested that the pleiotropic phenotypes of the ply2 mutant can be ascribed to a defect in KL-signaling. Molecular and biochemical analyses revealed that the mutant KAI2ply2 protein is impaired in its ligand-binding activity. In support of this conclusion, X-ray crystallography studies suggested that the KAI2ply2 mutation not only results in a narrowed entrance gate for the ligand but also alters the structural flexibility of the helical lid domains. We discuss the structural implications of the Ala219 residue with regard to ligand-specific binding and signaling of KAI2, together with potential functions of KL-signaling in the context of the light-regulatory network in Arabidopsis thaliana.

Indexed as

AllelesArabidopsisArabidopsis ProteinsHydrolasesLigandsLightLight Signal TransductionMutation, MissensePhenotypeArabidopsis ProteinsHTL protein, ArabidopsisHydrolasesLigands

Identifiers

PMID29722815
PMCPMC6022639
OpenAlexW2799448705

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.