Evidence map›Paper›PMID 29721834›Full record

ArticleJournal of microbiology (Seoul, Korea)2018

Comparative genomic analysis of Geosporobacter ferrireducens and its versatility of anaerobic energy metabolism.

Man-Young Jung, So-Jeong Kim, Jong-Geol Kim, Heeji Hong, Joo-Han Gwak, Soo-Je Park, Yang-Hoon Kim, Sung-Keun Rhee

Abstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Enrichment ofFrontiers in microbiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Man-Young JungDepartment of Microbiology and Ecosystem Science, Division of Microbial Ecology, University of Vienna, A-1090, Vienna, Austria.
So-Jeong KimGeologic Environment Research Division, Korea Institute of Geoscience and Mineral Resources, Daejeon, 34132, Republic of Korea. sojkim86@kigam.re.kr.
Jong-Geol KimDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Heeji HongDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Joo-Han GwakDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Soo-Je ParkDepartment of Biology, Jeju National University, Jeju, 63243, Republic of Korea.
Yang-Hoon KimDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Sung-Keun RheeDepartment of Microbiology, Chungbuk National University, Cheongju, 28644, Republic of Korea. rhees@chungbuk.ac.kr.
Chungbuk National University · KRJeju National University · KRKorea Institute of Geoscience and Mineral Resources · KRUniversity of Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the family Clostridiaceae within phylum Firmicutes are ubiquitous in various iron-reducing environments. However, genomic data on iron-reducing bacteria of the family Clostridiaceae, particularly regarding their environmental distribution, are limited. Here, we report the analysis and comparison of the genomic properties of Geosporobacter ferrireducens IRF9, a strict anaerobe that ferments sugars and degrades toluene under iron-reducing conditions, with those of the closely related species, Geosporobacter subterraneus DSM 17957. Putative alkyl succinate synthase-encoding genes were observed in the genome of strain IRF9 instead of the typical benzyl succinate synthase-encoding genes. Canonical genes associated with iron reduction were not observed in either genome. The genomes of strains IRF9 and DMS 17957 harbored genes for acetogenesis, that encode two types of Rnf complexes mediating the translocation of H

Indexed as

GenomicsAdenosine TriphosphatasesAmino Acid SequenceBacillotaBacteria, AnaerobicBacterial ProteinsBacterial Typing TechniquesBase SequenceClostridiaceaeDNA, BacterialEnergy MetabolismFermentationGenes, BacterialGenes, rRNAGenome, BacterialIronAdenosine TriphosphatasesBacterial ProteinsDNA, BacterialIronSugarsATPasecomparative genomicsGeosporobacter ferrireducens IRF9Geosporobacter subterraneus DSM 17957Rnf complextoluene

Identifiers

PMID29721834
OpenAlexW2800241077

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.