Evidence map›Paper›PMID 29720695›Full record

ArticleScientific reports2018

DNA Methylation of T1R1 Gene in the Vegetarian Adaptation of Grass Carp Ctenopharyngodon idella.

Wenjing Cai, Shan He, Xu-Fang Liang, Xiaochen Yuan

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Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 33 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Wenjing CaiCollege of Fisheries, Chinese Perch Research Center, Huazhong Agricultural University, Wuhan, 430070, China.
Shan HeCollege of Fisheries, Chinese Perch Research Center, Huazhong Agricultural University, Wuhan, 430070, China.
Xu-Fang LiangCollege of Fisheries, Chinese Perch Research Center, Huazhong Agricultural University, Wuhan, 430070, China. xufang_liang@hotmail.com.
Xiaochen YuanCollege of Fisheries, Chinese Perch Research Center, Huazhong Agricultural University, Wuhan, 430070, China.
Huazhong Agricultural University · CNZhejiang Institute of Freshwater Fisheries · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although previous studies have indicated importance of taste receptors in food habits formation in mammals, little is known about those in fish. Grass carp is an excellent model for studying vegetarian adaptation, as it shows food habit transition from carnivore to herbivore. In the present study, pseudogenization or frameshift mutations of the umami receptors that hypothesized related to dietary switch in vertebrates, were not found in grass carp, suggesting other mechanisms for vegetarian adaptation in grass carp. T1R1 and T1R3 strongly responded to L-Arg and L-Lys, differing from those of zebrafish and medaka, contributing to high species specificity in amino acid preferences and diet selection of grass carp. After food habit transition of grass carp, DNA methylation levels were higher in CPG1 and CPG3 islands of upstream control region of T1R1 gene. Luciferase activity assay of upstream regulatory region of T1R1 (-2500-0 bp) without CPG1 or CPG3 indicated that CPG1 and CPG3 might be involved in transcriptional regulation of T1R1 gene. Subsequently, high DNA methylation decreased expression of T1R1 in intestinal tract. It could be a new mechanism to explain, at least partially, the vegetarian adaptation of grass carp by regulation of expression of umami receptor via epigenetic modification.

Indexed as

Adaptation, PhysiologicalDNA MethylationAmino Acid SequenceAnimalsCarpsCell LineCpG IslandsEpigenesis, GeneticFeeding BehaviorGene ExpressionGenes, ReporterHumansMammalsQuantitative Trait LociReceptors, G-Protein-CoupledSyntenyReceptors, G-Protein-Coupledtaste receptors, type 1

Identifiers

PMID29720695
PMCPMC5931979
OpenAlexW2807660312

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.