Evidence map›Paper›PMID 29720625›Full record

ArticleNature communications2018

Systematic mapping of contact sites reveals tethers and a function for the peroxisome-mitochondria contact.

Nadav Shai, Eden Yifrach, Carlo W T van Roermund, Nir Cohen, Chen Bibi, Lodewijk IJlst, Laetitia Cavellini, Julie Meurisse, Ramona Schuster, Lior Zada and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 199 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
199citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

199 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Stay in touch with the endoplasmic reticulum.Science China. Life sciences · 2024
    Pooled it
  2. Cellular Mechanisms Enabling Mitochondria Transfer and Transplantation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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  13. Heterogeneity, dynamics and organelle interactions of lipid droplets.Nature reviews. Molecular cell biology · 2026
    Review
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139 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Nadav ShaiDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel.
Eden YifrachDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel.
Carlo W T van RoermundLaboratory Genetic Metabolic Diseases, Academic Medical Center, University of Amsterdam, Amsterdam, 1105 AZ, The Netherlands.
Nir CohenDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel.ORCID http://orcid.org/0000-0002-5634-1643
Chen BibiDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel.
Lodewijk IJlstLaboratory Genetic Metabolic Diseases, Academic Medical Center, University of Amsterdam, Amsterdam, 1105 AZ, The Netherlands.
Laetitia CavelliniLaboratoire de Biologie Moléculaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR8226, 75005, Paris, France.
Julie MeurisseLaboratoire de Biologie Moléculaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR8226, 75005, Paris, France.
Ramona SchusterInstitute for Genetics, CECAD Research Center, University of Cologne, 50931, Cologne, Germany.
Lior ZadaDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel.
Muriel C MariDepartment of Cell Biology, University of Groningen, University Medical Center Groningen, Amsterdam, The Netherlands.
Fulvio M ReggioriDepartment of Cell Biology, University of Groningen, University Medical Center Groningen, Amsterdam, The Netherlands.
Adam L HughesDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, UT, 84112, USA.
Mafalda Escobar-HenriquesInstitute for Genetics, CECAD Research Center, University of Cologne, 50931, Cologne, Germany.
Mickael M CohenLaboratoire de Biologie Moléculaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR8226, 75005, Paris, France.
Hans R WaterhamLaboratory Genetic Metabolic Diseases, Academic Medical Center, University of Amsterdam, Amsterdam, 1105 AZ, The Netherlands.
Ronald J A WandersLaboratory Genetic Metabolic Diseases, Academic Medical Center, University of Amsterdam, Amsterdam, 1105 AZ, The Netherlands.
Maya SchuldinerDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel. maya.schuldiner@weizmann.ac.il.ORCID http://orcid.org/0000-0001-9947-115X
Einat ZalckvarDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel. einat.zalckvar@weizmann.ac.il.

Funding

Regulation of Mitochondrial HomeostasisR35GM119694 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Adam Hughes · 2016 to 2026
$4.2M
Role of Mitophagy in Mitochondrial Protein Quality ControlR00AG043095 · NIA · UNIVERSITY OF UTAH · PI HUGHES, ADAM · 2014 to 2016
$740k
Role of Mitophagy in Mitochondrial Protein Quality ControlK99AG043095 · NIA · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HUGHES, ADAM · 2013 to 2013
$90k
NIA NIH HHS K99 AG043095NIA NIH HHS R00 AG043095NIGMS NIH HHS R35 GM119694
6 · The paper itself

Abstract

The understanding that organelles are not floating in the cytosol, but rather held in an organized yet dynamic interplay through membrane contact sites, is altering the way we grasp cell biological phenomena. However, we still have not identified the entire repertoire of contact sites, their tethering molecules and functions. To systematically characterize contact sites and their tethering molecules here we employ a proximity detection method based on split fluorophores and discover four potential new yeast contact sites. We then focus on a little-studied yet highly disease-relevant contact, the Peroxisome-Mitochondria (PerMit) proximity, and uncover and characterize two tether proteins: Fzo1 and Pex34. We genetically expand the PerMit contact site and demonstrate a physiological function in β-oxidation of fatty acids. Our work showcases how systematic analysis of contact site machinery and functions can deepen our understanding of these structures in health and disease.

Indexed as

Binding SitesCytoplasmGTP PhosphohydrolasesIntracellular MembranesMembrane ProteinsMitochondriaMitochondrial ProteinsPeroxinsPeroxisomesProtein BindingProtein Interaction MappingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsFZO1 protein, S cerevisiaeGTP PhosphohydrolasesMembrane ProteinsMitochondrial ProteinsPeroxinsPex34 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID29720625
PMCPMC5932058

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.