Evidence map›Paper›PMID 29719599›Full record

ArticleOncotarget2018

Fanconi anemia and homologous recombination gene variants are associated with functional DNA repair defects

Caroline V M Verhagen, David M Vossen, Kerstin Borgmann, Floor Hageman, Reidar Grénman, Manon Verwijs-Janssen, Lisanne Mout, Roel J C Kluin, Marja Nieuwland, Tesa M Severson and 10 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

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  8. MutatedCells · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 4 countries.

Caroline V M VerhagenDivision of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
David M VossenDivision of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Kerstin BorgmannLaboratory of Radiobiology and Experimental Radiation Oncology, University Medical Centre Hamburg-Eppendorf, Hamburg, Germany.
Floor HagemanDivision of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Reidar GrénmanDepartment of Otorhinolaryngology, Turku University Hospital, University of Turku, Turku, Finland.
Manon Verwijs-JanssenDivision of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Lisanne MoutDivision of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Roel J C KluinGenomics Core Facility, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Marja NieuwlandGenomics Core Facility, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Tesa M SeversonDivision of Molecular Pathology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Arno VeldsGenomics Core Facility, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Ron KerkhovenGenomics Core Facility, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Mark J O'ConnorOncology Innovative Medicines, AstraZeneca, Saffron Walden, UK.
Martijn van der HeijdenDivision of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Marie-Louise van VelthuysenDepartment of Pathology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Marcel VerheijDivision of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Volkert B WreesmannDepartment of Head and Neck Oncology and Surgery, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Lodewyk F A WesselsMolecular Carcinogenesis, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Michiel W M van den BrekelDepartment of Head and Neck Oncology and Surgery, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
Conchita VensDivision of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
The Netherlands Cancer Institute · NLAstraZeneca (United Kingdom) · GBOncode Institute · NLUniversität Hamburg · DEUniversity of Turku · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutations in Fanconi Anemia or Homologous Recombination (FA/HR) genes can cause DNA repair defects and could therefore impact cancer treatment response and patient outcome. Their functional impact and clinical relevance in head and neck squamous cell carcinoma (HNSCC) is unknown. We therefore questioned whether functional FA/HR defects occurred in HNSCC and whether they are associated with FA/HR variants. We assayed a panel of 29 patient-derived HNSCC cell lines and found that a considerable fraction is hypersensitive to the crosslinker Mitomycin C and PARP inhibitors, a functional measure of FA/HR defects. DNA sequencing showed that these hypersensitivities are associated with the presence of bi-allelic rare germline and somatic FA/HR gene variants. We next questioned whether such variants are associated with prognosis and treatment response in HNSCC patients. DNA sequencing of 77 advanced stage HNSCC tumors revealed a 19% incidence of such variants. Importantly, these variants were associated with a poor prognosis (

Indexed as

DNA repairFanconi anemiagene variantsHNSCChomologous recombination

Identifiers

PMID29719599
PMCPMC5915066
OpenAlexW2795735674

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.