Evidence map›Paper›PMID 29718303›Full record

ArticleNucleic acids research2018

The KDM4A/KDM4C/NF-κB and WDR5 epigenetic cascade regulates the activation of B cells.

Kuo-Hsuan Hung, Yong H Woo, I-Ying Lin, Chin-Hsiu Liu, Li-Chieh Wang, Hsin-Yu Chen, Bor-Luen Chiang, Kuo-I Lin

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
  2. Review
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  7. Article
  8. Article
  9. Article
  10. Astrocyte KDM4A mediates chemokines and drives neutrophil infiltration to aggravate cerebral ischemia and reperfusion injury.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2024
    Article
  11. Review
  12. Review
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  16. KDM4 Demethylases: Structure, Function, and Inhibitors.Advances in experimental medicine and biology · 2023
    Article
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  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Kuo-Hsuan HungGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Yong H WooDivision of Biological Sciences, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia.
I-Ying LinGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Chin-Hsiu LiuGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Li-Chieh WangDepartment of Pediatrics, National Taiwan University Hospital, Taipei 100, Taiwan.
Hsin-Yu ChenGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Bor-Luen ChiangDepartment of Pediatrics, National Taiwan University Hospital, Taipei 100, Taiwan.
Kuo-I LinGenomics Research Center, Academia Sinica, Taipei 115, Taiwan.
Genomics Research Center, Academia Sinica · TWKaohsiung Medical University · TWKing Abdullah University of Science and Technology · SANational Taiwan University · TWNational Taiwan University Hospital · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

T follicular helper (Tfh) cell-derived signals promote activation and proliferation of antigen-primed B cells. It remains unclear whether epigenetic regulation is involved in the B cell responses to Tfh cell-derived signals. Here, we demonstrate that Tfh cell-mimicking signals induce the expression of histone demethylases KDM4A and KDM4C, and the concomitant global down-regulation of their substrates, H3K9me3/me2, in B cells. Depletion of KDM4A and KDM4C potentiates B cell activation and proliferation in response to Tfh cell-derived signals. ChIP-seq and de novo motif analysis reveals NF-κB p65 as a binding partner of KDM4A and KDM4C. Their co-targeting to Wdr5, a MLL complex member promoting H3K4 methylation, up-regulates cell cycle inhibitors Cdkn2c and Cdkn3. Thus, Tfh cell-derived signals trigger KDM4A/KDM4C - WDR5 - Cdkn2c/Cdkn3 cascade in vitro, an epigenetic mechanism regulating proper proliferation of activated B cells. This pathway is dysregulated in B cells from systemic lupus erythematosus patients and may represent a pathological link.

Indexed as

AnimalsB-LymphocytesCell ProliferationCells, CulturedCyclin-Dependent Kinase Inhibitor p18Cyclin-Dependent Kinase Inhibitor ProteinsEpigenesis, GeneticHistone DemethylasesIntracellular Signaling Peptides and ProteinsJumonji Domain-Containing Histone DemethylasesLupus Erythematosus, SystemicLymphocyte ActivationMiceMice, Inbred C57BLMice, TransgenicProtein BindingCdkn2c protein, mouseCdkn3 protein, mouseCyclin-Dependent Kinase Inhibitor p18Cyclin-Dependent Kinase Inhibitor ProteinsHistone DemethylasesIntracellular Signaling Peptides and ProteinsJMJD2A protein, mouseJmjd2c protein, mouseJumonji Domain-Containing Histone DemethylasesProteinsProtein Tyrosine PhosphatasesRela protein, mouseTranscription Factor RelAWdr5 protein, mouse

Identifiers

PMID29718303
PMCPMC6009645
OpenAlexW2809080525

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.