Evidence map›Paper›PMID 29718283›Full record

ArticleThe Journal of infectious diseases2018

Drug-Resistance and Population Structure of Plasmodium falciparum Across the Democratic Republic of Congo Using High-Throughput Molecular Inversion Probes.

Ozkan Aydemir, Mark Janko, Nick J Hathaway, Robert Verity, Melchior Kashamuka Mwandagalirwa, Antoinette K Tshefu, Sofonias K Tessema, Patrick W Marsh, Alice Tran, Thomas Reimonn and 7 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed, 1 pooled it
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 1 synthesis or guideline pooled it, 143 citations in OpenAlex.

  1. Pooled it
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

Ozkan AydemirProgram in Bioinformatics and Integrative Biology, University of Massachusetts, Worcester.
Mark JankoDepartment of Geography, University of North Carolina, Chapel Hill.
Nick J HathawayProgram in Bioinformatics and Integrative Biology, University of Massachusetts, Worcester.
Robert VerityMedical Research Council Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London, United Kingdom.
Melchior Kashamuka MwandagalirwaKinshasa School of Public Health, Hôpital General Provincial de Reference de Kinshasa.
Antoinette K TshefuCommunity Health, Kinshasa School of Public Health, School of Medicine, University of Kinshasa, Democratic Republic of Congo.
Sofonias K TessemaDivision of Infectious Disease, University of California, San Francisco.
Patrick W MarshProgram in Bioinformatics and Integrative Biology, University of Massachusetts, Worcester.
Alice TranProgram in Bioinformatics and Integrative Biology, University of Massachusetts, Worcester.
Thomas ReimonnProgram in Bioinformatics and Integrative Biology, University of Massachusetts, Worcester.
Azra C GhaniMedical Research Council Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London, United Kingdom.
Anita GhansahDepartment of Parasitology, Noguchi Memorial Institute of Medical Research, Ghana.
Jonathan J JulianoDepartment of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill.
Bryan R GreenhouseDivision of Infectious Disease, University of California, San Francisco.
Michael EmchDepartment of Geography, University of North Carolina, Chapel Hill.
Steven R MeshnickDepartment of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill.
Jeffrey A BaileyProgram in Bioinformatics and Integrative Biology, University of Massachusetts, Worcester.
University of North Carolina at Chapel Hill · USMedical Research Council · GBUniversity of California, San Francisco · USKinshasa General Hospital · CDNoguchi Memorial Institute for Medical Research · GHUniversity of Kinshasa · CDUniversity of Massachusetts Chan Medical School · US

Funding

Research Services CoreP2CHD050924 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN B GUZZO · 2015 to 2026
$9.6M
Medical Scientist Training at UMMS Administrative SupplementT32GM107000 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI KIEFE, CATARINA I. · 2013 to 2022
$4.9M
Epidemiological and Spatial Models of Malaria TransmissionR01AI107949 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MESHNICK, STEVEN RICHARD · 2014 to 2018
$2.5M
Human copy number polymorphism and severe malariaR01AI099473 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BAILEY, JEFFREY A. · 2012 to 2015
$2.3M
Mentoring in Translational Malaria GenomicsK24AI134990 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jonathan J Juliano · 2018 to 2026
$1.6M
Diversity and Phenotype of Artemisinin Resistance Mutations in Central AfricaR21AI121465 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JULIANO, JONATHAN J · 2016 to 2017
$438k
Medical Research Council MR/N01507X/1Medical Research Council MR/R015600/1NIAID NIH HHS K24 AI134990NIAID NIH HHS R01 AI099473NIAID NIH HHS R01 AI107949NIAID NIH HHS R21 AI121465NICHD NIH HHS P2C HD050924NIGMS NIH HHS T32 GM107000
6 · The paper itself

Abstract

A better understanding of the drivers of the spread of malaria parasites and drug resistance across space and time is needed. These drivers can be elucidated using genetic tools. Here, a novel molecular inversion probe (MIP) panel targeting all major drug-resistance mutations and a set of microsatellites was used to genotype Plasmodium falciparum infections of 552 children from the 2013-2014 Demographic and Health Survey conducted in the Democratic Republic of the Congo (DRC). Microsatellite-based analysis of population structure suggests that parasites within the DRC form a homogeneous population. In contrast, sulfadoxine-resistance markers in dihydropteroate synthase show marked spatial structure with ongoing spread of double and triple mutants compared with 2007. These findings suggest that parasites in the DRC remain panmictic despite rapidly spreading antimalarial-resistance mutations. Moreover, highly multiplexed targeted sequencing using MIPs emerges as a cost-effective method for elucidating pathogen genetics in complex infections in large cohorts.

Indexed as

Drug ResistanceMutationChildDemocratic Republic of the CongoFemaleHigh-Throughput Nucleotide SequencingHumansMalaria, FalciparumMaleMicrosatellite RepeatsPlasmodium falciparumPopulation SurveillanceSulfadoxineSurveys and QuestionnairesSulfadoxine

Identifiers

PMID29718283
PMCPMC6093412
OpenAlexW2801230589

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.