ArticleGigaScience2018
The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species.
Article in GigaScience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
20 citing papers in PubMed.
- Toward Characterizing Environmental Sources of Non-tuberculous Mycobacteria (NTM) at the Species Level: A Tutorial Review of NTM Phylogeny and Phylogenetic Classification.ACS environmental Au · 2024Review
- Why and how to use the SeqCode.mLife · 2024Article
- Epiphytic common core bacteria in the microbiomes of co-located green (Ulva), brown (Saccharina) and red (Grateloupia, Gelidium) macroalgae.Microbiome · 2023Article
- Complete Genome Sequence of Vulcanisaeta souniana Strain IC-059, a Hyperthermophilic Archaeon Isolated from Hot Spring Water in Japan.Microbiology resource announcements · 2023Article
- Development of the SeqCode: A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type.Systematic and applied microbiology · 2022Review
- Phylogenomic Analyses and Molecular Signatures Elucidating the Evolutionary Relationships amongst theMicroorganisms · 2022Article
- Phylogenomic and comparative genomic analyses ofInternational journal of systematic and evolutionary microbiology · 2022Article
- Constructing a Defined Starter for Multispecies Vinegar Fermentation via Evaluation of the Vitality and Dominance of Functional Microbes in an Autochthonous Starter.Applied and environmental microbiology · 2022Article
- gcType: a high-quality type strain genome database for microbial phylogenetic and functional research.Nucleic acids research · 2021Article
- Characterization and Distribution of Agar-degrading Steroidobacter agaridevorans sp. nov., Isolated from Rhizosphere Soils.Microbes and environments · 2021Article
- Whole Genome Sequence of Xylella fastidiosa ATCC 35879Current microbiology · 2020Article
- Use of Bacteriophages to Control Vibrio Contamination of Microalgae Used as a Food Source for Oyster Larvae During Hatchery Culture.Current microbiology · 2020Article
- Complete genome sequences of Streptococcus pyogenes type strain reveal 100%-match between PacBio-solo and Illumina-Oxford Nanopore hybrid assemblies.Scientific reports · 2020Article
- Platanus_B: an accurate de novo assembler for bacterial genomes using an iterative error-removal process.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020Article
- Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom.Nucleic acids research · 2020Article
- Advances in understanding the evolution of fungal genome architecture.F1000Research · 2020Review
- Characterization of the Potential ProbioticIranian journal of biotechnology · 2020Article
- Studying fungal pathogens of humans and fungal infections: fungal diversity and diversity of approaches.Genes and immunity · 2019Review
- gcMeta: a Global Catalogue of Metagenomics platform to support the archiving, standardization and analysis of microbiome data.Nucleic acids research · 2019Article
- Draft Genome Sequence of the Type Strain Streptomyces armeniacus ATCC 15676.Microbiology resource announcements · 2018Article
Corrections and comments
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Authors and funding
33 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genomic information is essential for taxonomic, phylogenetic, and functional studies to comprehensively decipher the characteristics of microorganisms, to explore microbiomes through metagenomics, and to answer fundamental questions of nature and human life. However, large gaps remain in the available genomic sequencing information published for bacterial and archaeal species, and the gaps are even larger for fungal type strains. The Global Catalogue of Microorganisms (GCM) leads an internationally coordinated effort to sequence type strains and close gaps in the genomic maps of microorganisms. Hence, the GCM aims to promote research by deep-mining genomic data.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.