Evidence map›Paper›PMID 29718144›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2018

Genomic Surveillance Reveals Diversity of Multidrug-Resistant Organism Colonization and Infection: A Prospective Cohort Study in Liver Transplant Recipients.

Nenad Macesic, Angela Gomez-Simmonds, Sean B Sullivan, Marla J Giddins, Samantha A Ferguson, Gautam Korakavi, David Leeds, Sarah Park, Kevin Shim, Madeleine G Sowash and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 93 citations in OpenAlex.

  1. Trial
  2. Review
  3. A posttranslational modification of fimbriae drives pathogenicity inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Review
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  7. Comparative metagenomics using pan-metagenomic graphs.bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
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  13. Article
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  16. Genomic investigation of multispecies and multivariantInfection control and hospital epidemiology · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. The Microbiome and Pediatric Transplantation.Journal of the Pediatric Infectious Diseases Society · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 3 countries.

Nenad MacesicDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Angela Gomez-SimmondsDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Sean B SullivanDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Marla J GiddinsDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Samantha A FergusonDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Gautam KorakaviDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
David LeedsDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Sarah ParkDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Kevin ShimDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Madeleine G SowashDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Melanie HofbauerDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Ryan FinkelDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Yue HuDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Jared WestDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Nora C ToussaintNew York Genome Center.
William G GreendykeDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Benjamin A MikoDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Marcus R PereiraDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Susan WhittierClinical Microbiology Laboratory, Department of Pathology and Cell Biology.
Elizabeth C VernaDivision of Digestive and Liver Disease, Columbia University Medical Center, New York, New York.
Anne-Catrin UhlemannDivision of Infectious Diseases, Columbia University Medical Center, New York, New York.
Columbia University Irving Medical Center · USGenomics (United Kingdom) · GBNew York Genome Center · US

Funding

Carbapenem-resistant bacterial colonization and infection after liver transplantR01AI116939 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI UHLEMANN, ANNE-CATRIN · 2015 to 2019
$2.4M
Columbia Integrated Training Program in Infectious Diseases ResearchT32AI100852 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MAGDALENA ELZBIETA SOBIESZCZYK, Anne-Catrin Uhlemann · 2013 to 2026
$2.2M
NIAID NIH HHS R01 AI116939NIAID NIH HHS T32 AI100852
6 · The paper itself

Abstract

Background: Multidrug-resistant organisms (MDROs) are an important cause of morbidity and mortality after solid organ transplantation. We aimed to characterize MDRO colonization dynamics and infection in liver transplant (LT) recipients through innovative use of active surveillance and whole-genome sequencing (WGS). Methods: We prospectively enrolled consecutive adult patients undergoing LT from March 2014 to March 2016. Fecal samples were collected at multiple timepoints from time of enrollment to 12 months posttransplant. Samples were screened for carbapenem-resistant Enterobacteriaceae (CRE), Enterobacteriaceae resistant to third-generation cephalosporins (Ceph-RE), and vancomycin-resistant enterococci. We performed WGS of CRE and selected Ceph-RE isolates. We also collected clinical data including demographics, transplant characteristics, and infection data. Results: We collected 998 stool samples and 119 rectal swabs from 128 patients. MDRO colonization was detected in 86 (67%) patients at least once and was significantly associated with subsequent MDRO infection (0 vs 19.8%, P = .002). Child-Turcotte-Pugh score at LT and duration of post-LT hospitalization were independent predictors of both MDRO colonization and infection. Temporal dynamics differed between MDROs with respect to onset of colonization, clearance, and infections. We detected an unexpected diversity of CRE colonizing isolates and previously unrecognized transmission that spanned Ceph-RE and CRE phenotypes, as well as a cluster of mcr-1-producing isolates. Conclusions: Active surveillance and WGS showed that MDRO colonization is a highly dynamic and complex process after LT. Understanding that complexity is crucial for informing decisions regarding MDRO infection control, use of therapeutic decolonization, and empiric treatment regimens.

Indexed as

Drug Resistance, Multiple, BacterialGenetic VariationLiver TransplantationAgedBacteriaCarbapenem-Resistant EnterobacteriaceaeCarrier StateCross InfectionFecesFemaleGenomicsHumansMaleMethicillin-Resistant Staphylococcus aureusMiddle AgedProspective Studies

Identifiers

PMID29718144
PMCPMC6117442
OpenAlexW2801168523

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.