Evidence map›Paper›PMID 29717420›Full record

ArticleProbiotics and antimicrobial proteins2019

Gene Cloning, Expression, and Antifungal Activities of Permatin from Naked Oat (Avena nuda).

Jian Liu, Deping Han, Yawei Shi

Abstract read
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In one paragraph

Article in Probiotics and antimicrobial proteins, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Plants (Basel, Switzerland) · 2022
    Article
  5. Ginkgo Seed Proteins: Characteristics, Functional Properties and Bioactivities.Plant foods for human nutrition (Dordrecht, Netherlands) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Jian LiuInstitute of Biotechnology, Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Shanxi University, Taiyuan, People's Republic of China.
Deping HanInstitute of Biotechnology, Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Shanxi University, Taiyuan, People's Republic of China.
Yawei ShiInstitute of Biotechnology, Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Shanxi University, Taiyuan, People's Republic of China. yaweishi@sxu.edu.cn.ORCID http://orcid.org/0000-0001-5887-4366

Funding

Key Research and Development Program of Shanxi Province 201603D211104Shanxi Scholarship Council of China 2017019Shanxi Scholarship Council of China No2017019Special Funds of the Natural Science Foundation of TaiYuan 11014908
6 · The paper itself

Abstract

Thaumatin-like proteins (TLPs) are the products of a large, highly complex gene family involved in host defense. TLPs also belong to the pathogenesis-related family 5 (PR-5) of plant defense proteins. Most TLPs exhibit potential antifungal activities, and their accumulation in the plant is related to many physiological processes. In this study, a gene encoding TLP named permatin with an open reading frame of 678 bp encoding a protein of 225 amino acids with a calculated molecular mass of 23.5 kDa was cloned from naked oat leaves. Phylogenetic analysis revealed that permatin shares high homology with a number of other TLPs among diverse taxa. Model of structure by homology modeling showed that permatin consists of an acidic cleft region consistent with most TLPs. Recombinant NusA-permatin was overexpressed in Escherichia coli strain BL21 and purified by Heparin column combined with Sephacryl S-200 column. The protein exhibited antifungal activity to Fusarium oxysporum (half maximal inhibitory concentration, IC

Indexed as

Cloning, MolecularAmino Acid SequenceAntifungal AgentsAvenaBase SequenceFusariumMolecular WeightMyceliumPhylogenyPlant LeavesPlant ProteinsReactive Oxygen SpeciesSequence AlignmentAntifungal AgentsPlant ProteinsReactive Oxygen Speciesthaumatin protein, plantAntifungal activityFusarium oxysporumGene cloningNaked oatPermatinRecombinant expression

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.