Evidence map›Paper›PMID 29717061›Full record

ArticleScience signaling2018

The interaction between IKKα and LC3 promotes type I interferon production through the TLR9-containing LAPosome.

Kachiko Hayashi, Manabu Taura, Akiko Iwasaki

Abstract read
In one paragraph

Article in Science signaling, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Article
  5. Role of autophagy in antiviral innate immunity.Cellular & molecular biology letters · 2026
    Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. LC3-Associated Phagocytosis in Bacterial Infection.Pathogens (Basel, Switzerland) · 2022
    Review
  20. APOBEC3A regulates transcription from interferon-stimulated response elements.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Kachiko HayashiDepartment of Immunobiology, Yale University, New Haven, CT 06520, USA.ORCID 0000-0002-4468-5473
Manabu TauraDepartment of Immunobiology, Yale University, New Haven, CT 06520, USA.ORCID 0000-0001-9577-8007
Akiko IwasakiDepartment of Immunobiology, Yale University, New Haven, CT 06520, USA. akiko.iwasaki@yale.edu.ORCID 0000-0002-7824-9856
Yale University · USHoward Hughes Medical Institute · US

Funding

Immunity to Genital Herpes Simplex-2R01AI054359 · NIAID · YALE UNIVERSITY · PI IWASAKI, AKIKO · 2004 to 2019
$5.2M
Viral Recognition by plasmacytoid dendritic cellR01AI064705 · NIAID · YALE UNIVERSITY · PI IWASAKI, AKIKO · 2006 to 2015
$3.9M
Autophagy in Antiviral ImmunityR01AI081884 · NIAID · YALE UNIVERSITY · PI IWASAKI, AKIKO · 2010 to 2014
$2.0M
Vaginally-delivered Nanoparticles for Prevention and Treatment of HSV-2 InfectionsR56AI125504 · NIAID · YALE UNIVERSITY · PI IWASAKI, AKIKO, SALTZMAN, W. MARK · 2016 to 2016
$386k
NIAID NIH HHS R01 AI054359NIAID NIH HHS R01 AI064705NIAID NIH HHS R01 AI081884NIAID NIH HHS R56 AI125504
6 · The paper itself

Abstract

Toll-like receptor 9 (TLR9) recognizes DNA in endosomes and activates distinct signaling pathways to stimulate the production of proinflammatory cytokines and type I interferons (IFNs). The assembly of signaling platforms on microtubule-associated proteins 1A/1B-light chain 3 (LC3)-decorated endosomal vesicles is required to transduce TLR9 signals that stimulate the production of IFN but not interleukin-12 p40 (IL-12p40). LC3-associated phagocytosis (LAP), a form of noncanonical autophagy, is critical for the activation of interferon regulatory factor 7 (IRF7) and for IFN synthesis. We showed that after the stimulation of TLR9 by CpG oligonucleotides, the autophagy protein LC3 and the kinase IKKα were recruited to endosomes that contained TLR9. The recruitment of IKKα and LC3 to such signaling endosomes was not stimulated by catalysts of classical autophagosome formation but involved LAP formation, which required ATG5 but not FIP200. In addition, we found that the LC3-IKKα complex further associated with both TRAF3 and IRF7. We identified three putative LC3-interacting regions (LIRs) in IKKα, and mutagenesis suggested that two of these were critical for direct binding to LC3. Moreover, mutation of the same LIR sequences failed to rescue type I IFN production in IKKα-deficient dendritic cells upon reconstitution. Together, these data suggest a direct link between LAP formation and IKKα recruitment downstream of TLR9 activation that is necessary to facilitate type I IFN production.

Indexed as

AnimalsAutophagosomesEndosomesHEK293 CellsHumansI-kappa B KinaseInterferon Regulatory Factor-7Interferon Type IMiceMice, Inbred C57BLMice, KnockoutMicrotubule-Associated ProteinsProtein BindingRAW 264.7 CellsToll-Like Receptor 9I-kappa B KinaseInterferon Regulatory Factor-7Interferon Type IMap1lc3b protein, mouseMicrotubule-Associated ProteinsToll-Like Receptor 9

Identifiers

PMID29717061
PMCPMC6462218
OpenAlexW2803092937

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.