Evidence map›Paper›PMID 29716616›Full record

ArticleVirology journal2018

Stability of the HTLV-1 glycoprotein 46 (gp46) gene in an endemic region of the Brazilian Amazon and the presence of a significant mutation (N93D) in symptomatic patients.

Maria de Nazaré do Socorro de Almeida Viana, Akim Felipe Santos Nobre, Edivaldo Costa, Ingrid Christiane Silva, Bruna Teles Pinheiro, Cássia Cristine Costa Pereira, Louise de Souza Canto Ferreira, Danilo Souza de Almeida, Marcos William Leão de Araújo, Mariza da Silva Borges and 4 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Maria de Nazaré do Socorro de Almeida VianaPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil. maryvyana@hotmail.com.
Akim Felipe Santos NobrePostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Edivaldo CostaVirology Section, Instituto Evandro Chagas, Health Surveillance Secretariat, Brazilian Ministry of Health, Ananindeua, Pará, Brazil.
Ingrid Christiane SilvaPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Bruna Teles PinheiroPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Cássia Cristine Costa PereiraPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Louise de Souza Canto FerreiraPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Danilo Souza de AlmeidaPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Marcos William Leão de AraújoFaculty of Pharmacy, Universidade Federal do Pará, Belém, Pará, Brazil.
Mariza da Silva BorgesFaculty of Nursing, Universidade Federal do Pará, Belém, Pará, Brazil.
Carlos Araujo da CostaPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Edna Aoba Yassui IshikawaPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Stephen Francis FerrariDepartment of Ecology, Universidade Federal de Sergipe, São Cristóvão, Sergipe, Brazil.
Maísa Silva de SousaPostgraduate Program in Tropical Diseases, Núcleo de Medicina Tropical, Universidade Federal do Pará, Belém, Pará, Brazil.
Universidade Federal do Pará · BRInstituto Evandro Chagas · BRUniversidade Federal de Sergipe · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe human T-lymphotropic virus type 1 (HTLV-1) affects 2-5 million people worldwide, and is associated with a number of degenerative and infectious diseases. The Envelope glycoproteins (gp) are highly conserved among the different HTLV-1 isolates, although nucleotide substitutions in the region that codifies these proteins may influence both the infectivity and the replication of the virus. The gp46 gene has functional domains which have been associated with the inhibition of the formation of the syncytium, cell-cell transmission, and the production of antibodies. The present study investigated the genetic stability of the gp46 gene of HTLV-1 in an endemic region of Brazilian Amazonia.

methodsIndex case (IC - a sample of a given family group) carriers of HTLV-1 were investigated in the metropolitan region of Belém (Pará, Brazil) between January 2010 (registered retrospectively) and December 2015. The sequences that codify the gp46 were amplified by PCR, purified and sequenced (MF084788-MF084825). The gene was characterized using bioinformatics and Bayesian Inference.

resultsThe 40 patients analyzed had a mean age of 45.2 years and 70% presented some type of symptom, with a predominance of pain and sensitivity, dysautonomia, and motor disorders. All patients presented the aA (Transcontinental Cosmopolitan) genotype, with an extremely low mutation rate, which is characteristic of the codifying region (aA - 1.83 × 10-

conclusionsThe aA HTLV-1 subtype is predominant in the metropolitan region of Belém and presented a high degree of genetic stability in the codifying region. The rare N93D amino acid mutation may be associated with the clinical manifestations of this viral infection. IMPORTANCE: Little is known of the phylogeny of HTLV-1 in the endemic region of Brazilian Amazonia, and few complete gene sequences are available for the gp46 glycoprotein from the local population. The nucleotide sequences of the viral gp46 gene recorded in the present study confirmed the genetic stability of the region, and pointed to a homogeneous viral group, with local geographic characteristics. Further research will be necessary to more fully understand the molecular diversity of this protein, given the potential of this codifying region as a model for an effective HTLV-1 vaccine. The identification of a rare mutation (N93D), present only in symptomatic patients, should also be investigated further as a potential clinical marker.

trial registrationISRCTN 12345678, registered 28 September 2014.

Indexed as

Endemic DiseasesMutationAdultAmino Acid SubstitutionBase SequenceBayes TheoremBrazilComputational BiologyFemaleGene ExpressionGene Products, envGenotypeHeterozygoteHTLV-I InfectionsHumansHuman T-lymphotropic virus 1Gene Products, envgp46 protein, Human T-cell leukemia virus type IRetroviridae Proteins, OncogenicGenetic diversityMolecular evolutionNeglected diseases

Identifiers

PMID29716616
PMCPMC5930498
OpenAlexW2806012102

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.