Evidence map›Paper›PMID 29715278›Full record

ArticlePloS one2018

Bacterial versus human thymidylate synthase: Kinetics and functionality.

Zahidul Islam, Ilya Gurevic, Timothy S Strutzenberg, Ananda K Ghosh, Tasnia Iqbal, Amnon Kohen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  4. Effect of 5-fluorouracil onFrontiers in microbiology · 2025
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  12. Detection of Genomic Uracil Patterns.International journal of molecular sciences · 2021
    Review
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Zahidul IslamDepartment of Chemistry, The University of Iowa, Iowa City, IA, United States of America.ORCID 0000-0003-3648-736X
Ilya GurevicDepartment of Chemistry, The University of Iowa, Iowa City, IA, United States of America.
Timothy S StrutzenbergDepartment of Chemistry, The University of Iowa, Iowa City, IA, United States of America.
Ananda K GhoshDepartment of Chemistry, The University of Iowa, Iowa City, IA, United States of America.
Tasnia IqbalDepartment of Chemistry, The University of Iowa, Iowa City, IA, United States of America.
Amnon KohenDepartment of Chemistry, The University of Iowa, Iowa City, IA, United States of America.
University of Iowa · US

Funding

PREDOCTORAL TRAINING PROGRAM IN BIOTECHNOLOGYT32GM008365 · NIGMS · UNIVERSITY OF IOWA · PI KERNS, ROBERT JOHN · 1990 to 2021
$3.8M
Tunneling and dynamic studies with DHFRR01GM065368 · NIGMS · UNIVERSITY OF IOWA · PI CHEATUM, CHRISTOPHER M · 2002 to 2017
$3.5M
NIGMS NIH HHS R01 GM065368NIGMS NIH HHS T32 GM008365NIH HHS R01GM065368NIH HHS T32GM008365
6 · The paper itself

Abstract

Thymidylate Synthase (TSase) is a highly conserved enzyme that catalyzes the production of the DNA building block thymidylate. Structurally, functionally and mechanistically, bacterial and mammalian TSases share remarkable similarities. Because of this closeness, bacterial enzymes have long been used as model systems for human TSase. Furthermore, while TSase inhibitors have long served as chemotherapeutic drugs, no TSase inhibitor serves as an antibiotic. Despite their high resemblance, the mammalian TSases are distinct in a few known aspects, such as having a N-terminal tail and two insertions in the primary sequence and active/inactive conformations. Here, we aim to comprehensively characterize human (hs) TSase and delineate its contrasts and the similarities to the well-studied Escherichia coli (ec) TSase. We found that, in contrast to ecTSase, Mg2+ does not enhance reaction rates for hsTSase. The temperature dependence of intrinsic kinetic isotope effects (KIEs), on the other hand, suggests that Mg2+ has little or no impact on the transition state of hydride transfer in either enzyme, and that the transition state for the hydride transfer in hsTSase is looser than in ecTSase. Additionally, the substrates' binding order is strictly ordered for ecTSase but slightly less ordered for hsTSase. The observed kinetic and functional differences between bacterial and human enzymes may aid in the development of antibiotic drugs with reduced toxicity.

Indexed as

Amino Acid SequenceEscherichia coliHumansKineticsModels, MolecularProtein ConformationSpecies SpecificityThymidylate SynthaseThymidylate Synthase

Identifiers

PMID29715278
PMCPMC5929524
OpenAlexW2799930526

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.