Evidence map›Paper›PMID 29713979›Full record

ArticleEnvironmental science and pollution research international2018

Molecular surveillance of Vittaforma-like microsporidia by a small-volume procedure in drinking water source in Taiwan: evidence for diverse and emergent pathogens.

Jung-Sheng Chen, Bing-Mu Hsu, Hsin-Chi Tsai, Yu-Pin Chen, Tung-Yi Huang, Kuan-Ying Li, Dar-Der Ji, Herng-Sheng Lee

Abstract read
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In one paragraph

Article in Environmental science and pollution research international, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Metagenomic sequencing for investigation of a national keratoconjunctivitis outbreak, Israel, 2022.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2023
    Article
  4. Article
  5. Article
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  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Jung-Sheng ChenGraduate Institute of Life Sciences, National Defense Medical Center, No. 161, Section 6, Minquan East Road, Neihu District, Taipei City, 114, Taiwan.
Bing-Mu HsuDepartment of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan.
Hsin-Chi TsaiDepartment of Psychiatry, Tzu-Chi General Hospital, Hualien, Taiwan.
Yu-Pin ChenDepartment of Orthopaedic Surgery, Taipei Medical University-Wan Fang Hospital, School of Medicine, Taipei Medical University, Taipei, Taiwan.
Tung-Yi HuangDepartment of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan.
Kuan-Ying LiDepartment of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan.
Dar-Der JiDepartment of Tropical Medicine, National Yang-Ming University, Taipei, Taiwan.
Herng-Sheng LeeGraduate Institute of Life Sciences, National Defense Medical Center, No. 161, Section 6, Minquan East Road, Neihu District, Taipei City, 114, Taiwan. herngsheng131419@gmail.com.
National Chung Cheng University · TWBuddhist Tzu Chi General Hospital · TWKaohsiung Veterans General Hospital · TWNational Defense Medical Center · TWNational Yang Ming Chiao Tung University · TWTaipei Medical University · TW

Funding

Ministry of Science and Technology, Taiwan MOST 105-2116-M-194-014the Centers for Disease Control, Taiwan MOHW105-CDC-C-114-112601The Centers for Disease Control, Taiwan MOHW105-CDC-C-114-122109
6 · The paper itself

Abstract

Vittaforma corneae belongs to microsporidia, which include over 1500 species of opportunistic obligate intracellular fungi infecting almost all known animal taxa. Although outbreaks of ocular infections caused by waterborne V. corneae have been reported in recent years, little is known about the occurrence of this pathogen in aquatic environments. In this study, 50 water samples from rivers and reservoirs around Taiwan in two seasons were analyzed to explore the presence of this pathogen in natural aquatic environments. A high detection rate of Vittaforma-like amplicons (94%; 47/50) was observed in the water samples when examined by nested PCR with primer pairs specific to the small ribosomal subunit (SSU) rRNA gene. After electrophoresis, many lanes showed multiband patterns with expected molecular weights. After confirmation by DNA sequencing and by sequence alignment in the NCBI database, we identified a variety of Vittaforma-like microsporidia with weak sequence similarity, with approximately 85% identity to V. corneae, thus indicating high diversity of microsporidia in aquatic environments. Phylogenetic analysis showed clear-cut microsporidian clade classification and indicated that the most Vittaforma-like microsporidia in this study belong to clade IV and cluster into four major groups. The first group is similar to the microsporidia associated with ocular microsporidiosis. The second group is associated with the diarrheal pathogens, whereas the third and fourth groups are a novel group and a zoonotic group, respectively. This study provides abundant sequencing information, which will be useful for future molecular biological studies on microsporidia. Because microsporidia are important pathogens of animals and humans, it is urgently necessary to determine via a survey whether there are species with potential threats that have not yet been revealed.

Indexed as

AnimalsBase SequenceDNA, FungalDrinking WaterHumansMicrosporidiaMicrosporidiosisPhylogenyPolymerase Chain ReactionRiversSequence AlignmentSequence Analysis, DNATaiwanVittaformaWater MicrobiologyDNA, FungalDrinking WaterDiversityNested PCRRivers and reservoirsVittaforma corneaeVittaforma-like microsporidia

Identifiers

PMID29713979
OpenAlexW2801331252

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.