ArticleNature genetics2018
The Rosa genome provides new insights into the domestication of modern roses.
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Article in Nature genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 244 papers.
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244citing papers in PubMed
23.7field-weighted citation impact, top 1% of its field
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Who cites it
244 citing papers in PubMed, 539 citations in OpenAlex.
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- Alternaria alternata as a causal agent of rose black spot: resistance screening and structural defense mechanisms in Rosagermplasm.BMC plant biology · 2026Article
- The RhMPK3-RhLOB41-RhWRKY9 module orchestrates ethylene-induced petal abscission via dual control of ROS homeostasis in rose.Science advances · 2026Article
- Genome-wide analysis of the NLR gene family in strawberry reveals a novel immune receptor architecture in Rosaceae.BMC genomics · 2026Article
- A chromosome-level genome assembly of the endangered rose Rosa anemoniflora.Scientific data · 2026Article
- Optimizing the growth and flowering of Rosa hybrida L. (Roses) through synergistic light and biostimulant management.BMC plant biology · 2026Article
- Pangenomic analyses of rose uncover widespread structure variation and empower genomics-directed breeding.Nature genetics · 2026Article
- Haplotype-resolved genome assembly provides insights into the unique floral scent of Rosa rugosa originated in China.Molecular horticulture · 2026Article
- Genomic divergence, introgression and KASP fingerprinting panel development in five cultivar groups of sweet osmanthus.BMC plant biology · 2026Article
- Genome wide analysis of RLK-Pelle-L-LEC family in Rosa chinensis and negative regulation of black spot disease by RcPLLEC45.Plant molecular biology · 2026Article
- The chromosome-scale genome assembly and annotation of Rosa bracteata (Macartney Rose).Scientific data · 2026Article
- RrMYB2 Regulates Drought Stress via RrJMJ12-Dependent Epigenetic Modification in Rosa rugosa.Plant biotechnology journal · 2026Article
- Engineering resilient roses: molecular insights into biotic and abiotic stress adaptation.Horticulture research · 2026Article
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- Molecular investigation of the progenitors, origin and domestication patterns of diploid Chinese old garden roses.Annals of botany · 2026Article
184 more citing papers are in PubMed but not listed here.
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Authors and funding
46 authors at 8 institutions in 4 countries.
Olivier RaymondLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Jérôme GouzyLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-5695-4557
Jérémy JustLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.ORCID http://orcid.org/0000-0003-0842-9808
Hélène BadouinLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0002-2456-5968
Marion VerdenaudLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.ORCID http://orcid.org/0000-0002-4071-0782
Arnaud LemainqueCEA-Institut de Biologie François Jacob, Genoscope, Evry, France.
Philippe VergneLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Sandrine MojaUniv Lyon, UJM-Saint-Etienne, CNRS, Saint-Etienne, France.
Nathalie ChoisneUR1164-Research Unit in Genomics-Info, INRA, Université Paris-Saclay, Versailles, France.
Caroline PontINRA/UBP UMR 1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France.
Sébastien CarrèreLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.ORCID http://orcid.org/0000-0002-2348-0778
Jean-Claude CaissardUniv Lyon, UJM-Saint-Etienne, CNRS, Saint-Etienne, France.
Arnaud CoulouxCEA-Institut de Biologie François Jacob, Genoscope, Evry, France.
Ludovic CottretLIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.ORCID http://orcid.org/0000-0001-7418-7750
Jean-Marc AuryCEA-Institut de Biologie François Jacob, Genoscope, Evry, France.ORCID http://orcid.org/0000-0003-1718-3010
Judit SzécsiLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
David LatrasseInstitute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, University Paris-Sud, University of Evry, University Paris-Diderot, Sorbonne Paris-Cite, University of Paris-Saclay, Orsay, France.
Mohammed-Amin MadouiCEA-Institut de Biologie François Jacob, Genoscope, Evry, France.
Léa FrançoisLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Xiaopeng FuKey Laboratory of Horticultural Plant Biology, College of Horticulture & Forestry Sciences, Huazhong Agricultural University, Wuhan, China.
Shu-Hua YangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Annick DuboisLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Florence PiolaUniv Lyon, Université Claude Bernard Lyon 1, CNRS, ENTPE, UMR5023 LEHNA, Villeurbanne, France.
Antoine LarrieuLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Magali PerezInstitute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, University Paris-Sud, University of Evry, University Paris-Diderot, Sorbonne Paris-Cite, University of Paris-Saclay, Orsay, France.
Karine LabadieCEA-Institut de Biologie François Jacob, Genoscope, Evry, France.
Lauriane PerrierLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Benjamin GovettoAix Marseille Université, Avignon Université, CNRS, IRD, IMBE, Institut Méditerranéen de Biodiversité et d'Ecologie, Marseille, France.
Yoan LabrousseAix Marseille Université, Avignon Université, CNRS, IRD, IMBE, Institut Méditerranéen de Biodiversité et d'Ecologie, Marseille, France.
Priscilla VillandLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Claudia BardouxLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Véronique BoltzLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Céline Lopez-RoquesINRA, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Pascal HeitzlerInstitut de Biologie Moléculaire des Plantes, CNRS, UPR 2357, Strasbourg, France.
Teva VernouxLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.ORCID http://orcid.org/0000-0002-8257-4088
Michiel VandenbusscheLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France.
Hadi QuesnevilleUR1164-Research Unit in Genomics-Info, INRA, Université Paris-Saclay, Versailles, France.
Adnane BoualemInstitute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, University Paris-Sud, University of Evry, University Paris-Diderot, Sorbonne Paris-Cite, University of Paris-Saclay, Orsay, France.
Abdelhafid BendahmaneInstitute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, University Paris-Sud, University of Evry, University Paris-Diderot, Sorbonne Paris-Cite, University of Paris-Saclay, Orsay, France.
Chang LiuCenter for Molecular Biology (ZMBP), University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0003-2859-4288
Manuel Le BrisAix Marseille Université, Avignon Université, CNRS, IRD, IMBE, Institut Méditerranéen de Biodiversité et d'Ecologie, Marseille, France.
Jérôme SalseINRA/UBP UMR 1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France.
Sylvie BaudinoUniv Lyon, UJM-Saint-Etienne, CNRS, Saint-Etienne, France.ORCID http://orcid.org/0000-0002-3367-172X
Moussa BenhamedInstitute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, University Paris-Sud, University of Evry, University Paris-Diderot, Sorbonne Paris-Cite, University of Paris-Saclay, Orsay, France.
Patrick WinckerCEA-Institut de Biologie François Jacob, Genoscope, Evry, France.
Mohammed BendahmaneLaboratoire Reproduction et Développement des Plantes, Univ Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, Lyon, France. mohammed.bendahmane@ens-lyon.fr.ORCID http://orcid.org/0000-0003-1661-1060
Université Claude Bernard Lyon 1 · FRCentre National de la Recherche Scientifique · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRGénétique, Diversité, Écophysiologie des Céréales · FRUniversité Paris-Saclay · FRHuazhong Agricultural University · CNInstitute of Vegetables and Flowers · CNUniversity of Tübingen · DE
Funding
European Research Council 341076
Abstract
Roses have high cultural and economic importance as ornamental plants and in the perfume industry. We report the rose whole-genome sequencing and assembly and resequencing of major genotypes that contributed to rose domestication. We generated a homozygous genotype from a heterozygous diploid modern rose progenitor, Rosa chinensis 'Old Blush'. Using single-molecule real-time sequencing and a meta-assembly approach, we obtained one of the most comprehensive plant genomes to date. Diversity analyses highlighted the mosaic origin of 'La France', one of the first hybrids combining the growth vigor of European species and the recurrent blooming of Chinese species. Genomic segments of Chinese ancestry identified new candidate genes for recurrent blooming. Reconstructing regulatory and secondary metabolism pathways allowed us to propose a model of interconnected regulation of scent and flower color. This genome provides a foundation for understanding the mechanisms governing rose traits and should accelerate improvement in roses, Rosaceae and ornamentals.
Indexed as
Genome, PlantDomesticationFlowersGene Expression Regulation, PlantGenes, PlantGenetic VariationGenotypePlant ProteinsRosaSequence Analysis, DNAWhole Genome SequencingPlant Proteins
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