Evidence map›Paper›PMID 29712847›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

An endogenous dAMP ligand in

Mackenzie J Parker, Ailiena O Maggiolo, William C Thomas, Albert Kim, Steve P Meisburger, Nozomi Ando, Amie K Boal, JoAnne Stubbe

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Mechanism of controlled radical initiation in radical SAM GTP 3',8-cyclase.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Small-angle X-ray scattering studies of enzymes.Current opinion in chemical biology · 2023
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. IUCrJ · 2021
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Mackenzie J ParkerDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Ailiena O MaggioloDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802.
William C ThomasDepartment of Chemistry, Princeton University, Princeton, NJ 08544.ORCID 0000-0001-5490-4900
Albert KimDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139.
Steve P MeisburgerDepartment of Chemistry, Princeton University, Princeton, NJ 08544.
Nozomi AndoDepartment of Chemistry, Princeton University, Princeton, NJ 08544; nozomi.ando@princeton.edu akb20@psu.edu stubbe@mit.edu.
Amie K BoalDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802; nozomi.ando@princeton.edu akb20@psu.edu stubbe@mit.edu.
JoAnne StubbeDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139; nozomi.ando@princeton.edu akb20@psu.edu stubbe@mit.edu.ORCID 0000-0001-8076-4489
Massachusetts Institute of Technology · USPrinceton University · USPennsylvania State University · US

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
Mapping the Structural Basis for Mechanistic Diversity in Metalloenzyme SuperfamiliesR35GM119707 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Amie K Boal · 2016 to 2026
$5.0M
Protein Allostery and Catalysis Beyond Bragg DiffractionR35GM124847 · NIGMS · PRINCETON UNIVERSITY · PI Nozomi Ando · 2017 to 2026
$4.1M
Ribonucleotide Reductase Regulation: Diferric Y* assembly/maintenance and Sml1R01GM081393 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI STUBBE, JOANNE · 2008 to 2016
$3.9M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Structural Characterizations of Transient and Heterogeneous Protein ComplexesR00GM100008 · NIGMS · PRINCETON UNIVERSITY · PI ANDO, NOZOMI · 2014 to 2016
$747k
Structural Characterizations of Transient and Heterogeneous Protein ComplexesK99GM100008 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ANDO, NOZOMI · 2012 to 2013
$176k
Allosteric motions of B12 enzymesF32GM117757 · NIGMS · PRINCETON UNIVERSITY · PI MEISBURGER, STEPHEN PAUL · 2016 to 2017
$115k
Howard Hughes Medical InstituteNIGMS NIH HHS F32 GM117757NIGMS NIH HHS K99 GM100008NIGMS NIH HHS P41 GM103485NIGMS NIH HHS R00 GM100008NIGMS NIH HHS R01 GM081393NIGMS NIH HHS R35 GM119707NIGMS NIH HHS R35 GM124847NIH HHS S10 OD012289
6 · The paper itself

Abstract

The high fidelity of DNA replication and repair is attributable, in part, to the allosteric regulation of ribonucleotide reductases (RNRs) that maintains proper deoxynucleotide pool sizes and ratios in vivo. In class Ia RNRs, ATP (stimulatory) and dATP (inhibitory) regulate activity by binding to the ATP-cone domain at the N terminus of the large α subunit and altering the enzyme's quaternary structure. Class Ib RNRs, in contrast, have a partial cone domain and have generally been found to be insensitive to dATP inhibition. An exception is the

Indexed as

Allosteric RegulationBacillus subtilisBacterial ProteinsDeoxyadenine NucleotidesLigandsProtein BindingProtein ConformationRibonucleotide ReductasesScattering, Small AngleSubstrate Specificity2'-deoxy-5'-adenosine monophosphate2'-deoxyadenosine triphosphateBacterial ProteinsDeoxyadenine NucleotidesLigandsRibonucleotide ReductasesallosteryATP-conedAMPnucleotide metabolismribonucleotide reductase

Identifiers

PMID29712847
PMCPMC5960316
OpenAlexW2802102766

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.