Evidence map›Paper›PMID 29712845›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Systematic analysis of copy number variation associated with congenital diaphragmatic hernia.

Qihui Zhu, Frances A High, Chengsheng Zhang, Eliza Cerveira, Meaghan K Russell, Mauro Longoni, Maliackal P Joy, Mallory Ryan, Adam Mil-Homens, Lauren Bellfy and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Qihui ZhuThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032.
Frances A HighPediatric Surgical Research Laboratories, Massachusetts General Hospital, Boston, MA 02114.
Chengsheng ZhangThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032.
Eliza CerveiraThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032.
Meaghan K RussellPediatric Surgical Research Laboratories, Massachusetts General Hospital, Boston, MA 02114.
Mauro LongoniPediatric Surgical Research Laboratories, Massachusetts General Hospital, Boston, MA 02114.
Maliackal P JoyPediatric Surgical Research Laboratories, Massachusetts General Hospital, Boston, MA 02114.
Mallory RyanThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032.
Adam Mil-HomensThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032.
Lauren BellfyThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032.
Caroline M ColettiPediatric Surgical Research Laboratories, Massachusetts General Hospital, Boston, MA 02114.
Pooja BhayaniPediatric Surgical Research Laboratories, Massachusetts General Hospital, Boston, MA 02114.
Regis HilaPediatric Surgical Research Laboratories, Massachusetts General Hospital, Boston, MA 02114.
Jay M WilsonDepartment of Surgery, Boston Children's Hospital, Boston, MA 02115.
Patricia K DonahoePediatric Surgical Research Laboratories, Massachusetts General Hospital, Boston, MA 02114; pdonahoe@partners.org charles.lee@jax.org.ORCID 0000-0001-5502-4497
Charles LeeThe Jackson Laboratory for Genomic Medicine, Farmington, CT 06032; pdonahoe@partners.org charles.lee@jax.org.
Jackson Laboratory · USMassachusetts General Hospital · USBoston Children's Hospital · USHarvard University · USEwha Womans University · KR

Funding

THE DROSOPHILA GENETICS AND RNAI CORE (THE FLY CORE)P01HD068250 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, WENDY K, DONAHOE, PATRICIA K · 2011 to 2022
$17.1M
TRAINING GRANT IN GENETICST32GM007748 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Anne O'Donnell-Luria, Louise Wilkins-Haug · 1985 to 2026
$12.0M
NICHD NIH HHS P01 HD068250NIGMS NIH HHS T32 GM007748
6 · The paper itself

Abstract

Congenital diaphragmatic hernia (CDH), characterized by malformation of the diaphragm and hypoplasia of the lungs, is one of the most common and severe birth defects, and is associated with high morbidity and mortality rates. There is growing evidence demonstrating that genetic factors contribute to CDH, although the pathogenesis remains largely elusive. Single-nucleotide polymorphisms have been studied in recent whole-exome sequencing efforts, but larger copy number variants (CNVs) have not yet been studied on a large scale in a case control study. To capture CNVs within CDH candidate regions, we developed and tested a targeted array comparative genomic hybridization platform to identify CNVs within 140 regions in 196 patients and 987 healthy controls, and identified six significant CNVs that were either unique to patients or enriched in patients compared with controls. These CDH-associated CNVs reveal high-priority candidate genes including

Indexed as

DNA Copy Number VariationsGenetic MarkersPolymorphism, Single NucleotideCase-Control StudiesComparative Genomic HybridizationHernias, Diaphragmatic, CongenitalHumansPrognosisGenetic Markersbirth defectsCNVcongenital diaphragmatic herniacopy number variantcustomized array

Identifiers

PMID29712845
PMCPMC5960281
OpenAlexW2803064904

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.