Evidence map›Paper›PMID 29712429›Full record

ArticleJournal of chemical information and modeling2018

In Silico Pharmacoepidemiologic Evaluation of Drug-Induced Cardiovascular Complications Using Combined Classifiers.

Chuipu Cai, Jiansong Fang, Pengfei Guo, Qi Wang, Huixiao Hong, Javid Moslehi, Feixiong Cheng

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
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  4. Review
  5. Observational
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  11. Computational toxicology (Amsterdam, Netherlands) · 2021
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  13. Article
  14. Review
  15. Article
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  17. Comprehensive assessment of side effects in COVID-19 drug pipeline from a network perspective.Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association · 2020
    Article
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chuipu CaiInstitute of Clinical Pharmacology , Guangzhou University of Chinese Medicine , Guangzhou 510405 , China.
Jiansong FangInstitute of Clinical Pharmacology , Guangzhou University of Chinese Medicine , Guangzhou 510405 , China.ORCID 0000-0002-6998-5384
Pengfei GuoInstitute of Clinical Pharmacology , Guangzhou University of Chinese Medicine , Guangzhou 510405 , China.
Qi WangInstitute of Clinical Pharmacology , Guangzhou University of Chinese Medicine , Guangzhou 510405 , China.
Huixiao HongDivision of Bioinformatics and Biostatistics, National Center for Toxicological Research , FDA , Jefferson , Arkansas 72079 , United States.
Javid MoslehiDivision of Cardiology , Vanderbilt University , Nashville , Tennessee 37232 , United States.
Feixiong ChengCenter for Cancer Systems Biology (CCSB) and Department of Cancer Biology, Dana-Farber Cancer Institute , Harvard Medical School , Boston , Massachusetts 02215 , United States.ORCID 0000-0002-1736-2847

Funding

An individualized network medicine infrastructure for precision cardio-oncologyK99HL138272 · NHLBI · NORTHEASTERN UNIVERSITY · PI CHENG, FEIXIONG · 2017 to 2017
$86k
NHLBI NIH HHS K99 HL138272
6 · The paper itself

Abstract

Drug-induced cardiovascular complications are the most common adverse drug events and account for the withdrawal or severe restrictions on the use of multitudinous postmarketed drugs. In this study, we developed new in silico models for systematic identification of drug-induced cardiovascular complications in drug discovery and postmarketing surveillance. Specifically, we collected drug-induced cardiovascular complications covering the five most common types of cardiovascular outcomes (hypertension, heart block, arrhythmia, cardiac failure, and myocardial infarction) from four publicly available data resources: Comparative Toxicogenomics Database, SIDER, Offsides, and MetaADEDB. Using these databases, we developed a combined classifier framework through integration of five machine-learning algorithms: logistic regression, random forest, k-nearest neighbors, support vector machine, and neural network. The totality of models included 180 single classifiers with area under receiver operating characteristic curves (AUC) ranging from 0.647 to 0.809 on 5-fold cross-validations. To develop the combined classifiers, we then utilized a neural network algorithm to integrate the best four single classifiers for each cardiovascular outcome. The combined classifiers had higher performance with an AUC range from 0.784 to 0.842 compared to single classifiers. Furthermore, we validated our predicted cardiovascular complications for 63 anticancer agents using experimental data from clinical studies, human pluripotent stem cell-derived cardiomyocyte assays, and literature. The success rate of our combined classifiers reached 87%. In conclusion, this study presents powerful in silico tools for systematic risk assessment of drug-induced cardiovascular complications. This tool is relevant not only in early stages of drug discovery but also throughout the life of a drug including clinical trials and postmarketing surveillance.

Indexed as

Computer SimulationSafetyAntineoplastic AgentsCardiovascular SystemComputational BiologyDrug DiscoveryDrug-Related Side Effects and Adverse ReactionsHumansMolecular Targeted TherapyMyocytes, CardiacPluripotent Stem CellsProduct Surveillance, PostmarketingAntineoplastic Agents

Identifiers

PMID29712429
PMCPMC5975252

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.